Browse Element(s) Details


Os.55447.1.S1_at

Description gb:AK108108.1
DB_XREF= gi:32993317
TID=Os.55447.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55447 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-139-B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-B09, full insert sequence.
FL= gb:AK108108.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4044011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40430Os.47492.1.A1_s_at2/112+24483246..24495968HEAT repeat family protein, expressed
LOC_Os02g40440Os.55447.1.S1_at11/112+24510505..24512299GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os02g40450OsAffx.24661.1.S1_at11/112+24512472..24521364ROCK-N-ROLLERS, putative, expressed
LOC_Os02g40450Os.54715.1.S1_x_at10/112+24512472..24521364ROCK-N-ROLLERS, putative, expressed
LOC_Os02g40460Os.37362.1.S1_at11/112+24525423..24528954S1 RNA binding domain containing protein, expressed
LOC_Os02g40470NANA2+24535169..24536827retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55447.1.S1_at--521--2611Chr02:24511708..24511732 (25 bp)
AACCCGCAGCTGGTGAACATGGTGC
LOC_Os02g40440
Os.55447.1.S1_at--494--4991Chr02:24511787..24511811 (25 bp)
GCATGAACTTCGACTACATCTCCAA
LOC_Os02g40440
Os.55447.1.S1_at--772--5411Chr02:24511818..24511936 (25 bp)
GAACTACGGTTTTACGAACGTGCAG
LOC_Os02g40440
Os.55447.1.S1_at--475--511Chr02:24512063..24512087 (25 bp)
ATCGTCGTCGGCCAGTTCATGCACG
LOC_Os02g40440
Os.55447.1.S1_at--293--8131Chr02:24512146..24512170 (25 bp)
GGAACGGCGCCTCTAGATAAATAGA
LOC_Os02g40440
Os.55447.1.S1_at--380--9391Chr02:24512190..24512214 (25 bp)
TCGATCGATCGTCAGGACTATACTA
LOC_Os02g40440
Os.55447.1.S1_at--442--5691Chr02:24512205..24512229 (25 bp)
GACTATACTAGTTACCATCAATGGC
LOC_Os02g40440
Os.55447.1.S1_at--494--8031Chr02:24512232..24512256 (25 bp)
GGAGTATAATACACTCTCCACGTGT
LOC_Os02g40440
Os.55447.1.S1_at--350--2011Chr02:24512244..24512268 (25 bp)
ACTCTCCACGTGTAACAATTTCAGT
LOC_Os02g40440
Os.55447.1.S1_at--171--3191Chr02:24512259..24512283 (25 bp)
CAATTTCAGTTGTTTCTAGTGTATC
LOC_Os02g40440
Os.55447.1.S1_at--442--3711Chr02:24512274..24512298 (25 bp)
CTAGTGTATCTGTTGGCTGATTTCA
LOC_Os02g40440
Target Sequence 
AACCCGCAGCTGGTGAACATGGTGCGCGGCCTCAACCGCGCCATCGGCGCCGAAGTCTTCGTCACCGCCAACACCAACCG
CATGAACTTCGACTACATCTCCAACCCCCAGAACTACGGTTTTACGAACGTGCAGGTGGCGTGCTGCGGGCAGGGGCCGT
ACAACGGGATCGGACTGTGCACGGCGGCGTCGAACGTGTGCGACGACAGGGAGGCGTTCGCGTTCTGGGACGCGTTCCAC
CCAACGGAGAAGGCCAACCGCATCGTCGTCGGCCAGTTCATGCACGGCTCCACCGAATACATGCACCCCATGAACCTCAG
CACCATCCTCGCCGTCGACGACGAGGAACGGCGCCTCTAGATAAATAGATAGATATGTACACCGATCATCGATCGATCGT
CAGGACTATACTAGTTACCATCAATGGCACGGAGTATAATACACTCTCCACGTGTAACAATTTCAGTTGTTTCTAGTGTA
TCTGTTGGCTGATTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55447.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis