Browse Element(s) Details


Os.12844.1.A1_a_at

Description gb:CR285121
DB_XREF= gi:44671687
DB_XREF=CR285121
CLONE=p406f12p3
TID=Os.12844.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.12844 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:A43932 (H.sapiens) A43932 mucin 2 precursor, intestinal - human
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4045011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40390Os.40388.2.S1_s_at8/117+24214183..24216169hypothetical protein
LOC_Os07g40390Os.46392.1.S1_s_at8/117+24214183..24216169hypothetical protein
LOC_Os07g40390Os.40388.2.S1_x_at3/117+24214183..24216169hypothetical protein
LOC_Os07g40404OsAffx.16653.1.S1_at11/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40404OsAffx.16654.1.S1_at10/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40404OsAffx.16653.2.S1_at2/117+24218643..24225678CobW/P47K family protein
LOC_Os07g40420OsAffx.28845.1.S1_at11/117+24227674..24228213hypothetical protein
LOC_Os07g40420OsAffx.28845.1.S1_x_at11/117+24227674..24228213hypothetical protein
LOC_Os07g40434OsAffx.16653.2.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.16655.1.S1_at11/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.23206.1.S1_x_at8/117+24232015..24237496hypothetical protein
LOC_Os07g40434OsAffx.26758.1.S1_x_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.47957.1.S1_at2/117+24232015..24237496hypothetical protein
LOC_Os07g40434Os.51919.1.S1_at1/117+24232015..24237496hypothetical protein
LOC_Os07g40450Os.12844.1.A1_a_at11/117+24238928..24241674expressed protein
LOC_Os07g40460Os.11003.1.S1_at11/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40460OsAffx.2927.1.S1_at1/117+24242406..24245778Prefoldin subunit family protein, expressed
LOC_Os07g40470OsAffx.28846.1.S1_at11/117+24248361..24249359expressed protein
LOC_Os07g40480Os.10536.1.S1_at8/117+24251528..24255959DHHC zinc finger domain containing protein, expressed
LOC_Os07g40490OsAffx.28847.1.S1_at11/117+24258925..24259715hypothetical protein
LOC_Os07g40510Os.11524.1.S1_at11/117+24264784..24271675transposon protein, putative, CACTA, En/Spm sub-class, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12844.1.A1_a_at--787--71Chr07:24239260..24239284 (25 bp)
ATTGCCCAACTTCTGCATCAAATTG
LOC_Os07g40450
Os.12844.1.A1_a_at--168--2791Chr07:24239159..24239183 (25 bp)
AAGAGGTTTCGTTGCATTGTCGTAC
LOC_Os07g40450
Os.12844.1.A1_a_at--967--9051Chr07:24239147..24239171 (25 bp)
TGCATTGTCGTACCAAATGTGTCAT
LOC_Os07g40450
Os.12844.1.A1_a_at--644--6931Chr07:24239122..24239146 (25 bp)
GTAGTTACAGAACAGTGTACACTTT
LOC_Os07g40450
Os.12844.1.A1_a_at--841--2171Chr07:24239104..24239128 (25 bp)
ACACTTTTAAGTCTGGAGGATCATC
LOC_Os07g40450
Os.12844.1.A1_a_at--197--6171Chr07:24239089..24239113 (25 bp)
GAGGATCATCACTTGTAGCTTGATA
LOC_Os07g40450
Os.12844.1.A1_a_at--284--6811Chr07:24239061..24239085 (25 bp)
GTTTAGCTGCATCGCATAGGCCTGA
LOC_Os07g40450
Os.12844.1.A1_a_at--1043--871Chr07:24239044..24239068 (25 bp)
AGGCCTGATGTTTACACGGTTAGAC
LOC_Os07g40450
Os.12844.1.A1_a_at--470--6771Chr07:24239026..24239050 (25 bp)
GTTAGACAGCAAAACCTCCTACTAG
LOC_Os07g40450
Os.12844.1.A1_a_at--742--1731Chr07:24239013..24239037 (25 bp)
ACCTCCTACTAGACAAACTGACCTT
LOC_Os07g40450
Os.12844.1.A1_a_at--753--5491Chr07:24239002..24239026 (25 bp)
GACAAACTGACCTTAAGGGTTCAAT
LOC_Os07g40450
Target Sequence 
ATTGCCCAACTTCTGCATCAAATTGCTTTAATGAGTGACATGAGAAGTGGAGGGGAAGCAATTAAAATTATCAGGNCCCC
GTGATTATTTTTTCACTGCAGAAGAGGTTTCGTTGCATTGTCGTACCAAATGTGTCATGTAGTTACAGAACAGTGTACAC
TTTTAAGTCTGGAGGATCATCACTTGTAGCTTGATAATAGTTTAGCTGCATCGCATAGGCCTGATGTTTACACGGTTAGA
CAGCAAAACCTCCTACTAGACAAACTGACCTTAAGGGTTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12844.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis