Browse Element(s) Details


Os.6038.1.S1_at

Description gb:AK059544.1
DB_XREF= gi:32969562
TID=Os.6038.1
CNT=33
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.6038 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F03, full insert sequence.
FL= gb:AK102642.1 gb:AK059544.1 gb:AK099050.1 gb:AK106132.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0871011/11linker histone H1 and H5 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08650Os.54836.1.S1_at11/117+4455911..4457525expressed protein
LOC_Os07g08660Os.4726.1.S1_at11/117+4458855..446093040S ribosomal protein S15, putative, expressed
LOC_Os07g08670NANA7+4465720..4466277expressed protein
LOC_Os07g08680OsAffx.16160.1.S1_at11/117+4469620..4471386expressed protein
LOC_Os07g08690OsAffx.28350.1.S1_at11/117+4472479..4472793hypothetical protein
LOC_Os07g08700Os.53211.1.S1_at1/117+4475947..4476318hypothetical protein
LOC_Os07g08710Os.6038.1.S1_at11/117+4481747..4483068linker histone H1 and H5 family protein, expressed
LOC_Os07g08729Os.51984.1.S1_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729Os.53781.1.S1_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729Os.51984.1.S2_at11/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08729OsAffx.31822.1.A1_at6/117+4483557..4494549ATP-dependent DNA helicase ii, 70 kDa subunit family protein, expressed
LOC_Os07g08750Os.9515.1.S1_x_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08750Os.9515.1.S1_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08750Os.9515.3.S1_x_at11/117+4497246..4500211Protein kinase domain containing protein, expressed
LOC_Os07g08760Os.22262.3.S1_a_at11/117+4501670..4505973Nodule membrane protein, putative, expressed
LOC_Os07g08770Os.34507.1.A1_at11/117+4507452..4512085YGGT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006334biological_processnucleosome assembly
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0000786cellular_componentnucleosome
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6038.1.S1_at--457--7831Chr07:4482490..4482514 (25 bp)
GGTCAAGACCACCAAGGCCGCGAAG
LOC_Os07g08710
Os.6038.1.S1_at--333--4791Chr07:4482518..4482542 (25 bp)
GCTGCCAAGGCGAAGGCTCCTGCTA
LOC_Os07g08710
Os.6038.1.S1_at--653--8371Chr07:4482835..4482859 (25 bp)
GGCGATGATGCCACCTGGATTGGAT
LOC_Os07g08710
Os.6038.1.S1_at--515--6611Chr07:4482852..4482876 (25 bp)
GATTGGATTGCCCACCTTTTGATCT
LOC_Os07g08710
Os.6038.1.S1_at--1012--10391Chr07:4482868..4482892 (25 bp)
TTTTGATCTCCACAGGCGACAGCGC
LOC_Os07g08710
Os.6038.1.S1_at--936--5631Chr07:4482885..4482909 (25 bp)
GACAGCGCCATTAGCATCATCATCA
LOC_Os07g08710
Os.6038.1.S1_at--936--7411Chr07:4482929..4482953 (25 bp)
GTGTTCTGTAAATGCTTGTTCGTCT
LOC_Os07g08710
Os.6038.1.S1_at--143--10771Chr07:4482944..4482968 (25 bp)
TTGTTCGTCTTAGTTCGTTTCACCT
LOC_Os07g08710
Os.6038.1.S1_at--159--9551Chr07:4482972..4482996 (25 bp)
TCTAGGCGGTATCATCATCTTCTCG
LOC_Os07g08710
Os.6038.1.S1_at--380--9611Chr07:4482986..4483010 (25 bp)
TCATCTTCTCGCCTGTAATGATAGG
LOC_Os07g08710
Os.6038.1.S1_at--41--6511Chr07:4483005..4483029 (25 bp)
GATAGGATCCCATCATCCTCAAAAA
LOC_Os07g08710
Target Sequence 
GGTCAAGACCACCAAGGCCGCGAAGCCGGCTGCCAAGGCGAAGGCTCCTGCTACCACCAAGGCCGCGAAGCCGGCGACCA
AGACCAAGATCAAGGNTCGCCGCCGCGCCGGCGGCGAAGCCCAAGGCGTCTCCCAAGGCGAAGGCCAAGACCGCCACCTC
GCCGGTGAAGCCCCGCGGCCGCCCTGCCAAGTCCGCCAAGACCTCTGCCAAGGACTCGCCTGCCAAGAAGGCGGCGCCGG
TGGCTGCCAAGAAGAAGGCGGCGGCGACCAAGAAGAAGGCGTCGGTGGCTGCGGCGCCGGCTGCTCGCAAGGGTGCGGCG
AGGAAGAGCATGAAGTAGAGGTCGCCGGCGATGATGCCACCTGGATTGGATTGCCCACCTTTTGATCTCCACAGGCGACA
GCGCCATTAGCATCATCATCAGCAAGTAGTAGCAGAAATTGTGTTCTGTAAATGCTTGTTCGTCTTAGTTCGTTTCACCT
CCCTCTAGGCGGTATCATCATCTTCTCGCCTGTAATGATAGGATCCCATCATCCTCAAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis