Browse Element(s) Details


OsAffx.15908.2.S1_x_at

Description tigr:9634.m04187
TID=OsAffx.15908.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4337011/11Cytochrome P450 family protein
LOC_Os07g088601/11D-mannose binding lectin family protein
LOC_Os01g418341/11Chalcone and stilbene synthases, N-terminal domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43330NANA6+26047163..26050103retrotransposon protein, putative, unclassified
LOC_Os06g43340OsAffx.20387.1.S1_x_at1/116+26051062..26056937retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g43350OsAffx.28078.1.S1_x_at11/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43350OsAffx.28078.1.S1_at11/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43350OsAffx.28081.1.S1_x_at1/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43350OsAffx.26754.1.S1_x_at1/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43350OsAffx.20024.1.S1_x_at1/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43360OsAffx.5089.1.S1_at11/116+26067995..26068468hypothetical protein
LOC_Os06g43370OsAffx.15908.2.S1_at11/116+26071381..26073061Cytochrome P450 family protein
LOC_Os06g43370OsAffx.15908.2.S1_x_at11/116+26071381..26073061Cytochrome P450 family protein
LOC_Os06g43370OsAffx.26754.1.S1_x_at1/116+26071381..26073061Cytochrome P450 family protein
LOC_Os06g43384OsAffx.15908.5.S1_at11/116+26081409..26086094Cytochrome P450 family protein, expressed
LOC_Os06g43384OsAffx.15908.3.S1_at11/116+26081409..26086094Cytochrome P450 family protein, expressed
LOC_Os06g43400OsAffx.15908.4.S1_at11/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43400OsAffx.28078.1.S1_x_at1/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43400OsAffx.15908.1.S1_x_at1/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43410OsAffx.15908.1.S1_x_at11/116+26091519..26093624Cytochrome P450 family protein, expressed
LOC_Os06g43420OsAffx.15909.1.S1_at11/116+26096157..26097854Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009715biological_processchalcone biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009926biological_processauxin polar transport
GO:0005634cellular_componentnucleus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0004672molecular_functionprotein kinase activity
GO:0016210molecular_functionnaringenin-chalcone synthase activity
GO:0016301molecular_functionkinase activity
GO:0019825molecular_functionoxygen binding
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15908.2.S1_x_at--646--10511Chr06:26072465..26072489 (25 bp)
TTCGCGGAGCTAATCCGGAACCCGG
LOC_Os06g43370
OsAffx.15908.2.S1_x_at--868--5731Chr06:26072506..26072530 (25 bp)
GACGGCCGAGGTTCGCCGTGACTTC
LOC_Os06g43370
OsAffx.15908.2.S1_x_at--830--4231Chr06:26072511..26072535 (25 bp)
CCGAGGTTCGCCGTGACTTCGAGGC
LOC_Os06g43370
OsAffx.15908.2.S1_x_at--996--9972Chr06:26072582..26072606 (25 bp)
TACCTTCGCCTCGTCGTCAGGGAGA
LOC_Os06g43370
OsAffx.15908.2.S1_x_at--158--9732Chr06:26072817..26072841 (25 bp)
TCAAGGGCGCCGACTTCGAGCTCCT
LOC_Os06g43370
OsAffx.15908.2.S1_x_at--847--7671Chr06:26072885..26072909 (25 bp)
GGGTTCGCAAACGTGGAGCTCCCAC
LOC_Os06g43370
OsAffx.15908.2.S1_x_at--670--9571Chr06:26072922..26072946 (25 bp)
TCTTCCACATCGACTGGGAGGCCTC
LOC_Os06g43370
OsAffx.15908.2.S1_x_at--711--871Chr06:26072940..26072964 (25 bp)
AGGCCTCCGGTGTGGCTGACCCGAC
LOC_Os06g43370
OsAffx.15908.2.S1_x_at--858--8931Chr06:26072956..26072980 (25 bp)
TGACCCGACCGAGTTCGACATGACA
LOC_Os06g43370
OsAffx.15908.2.S1_x_at--692--4071Chr06:26072965..26072989 (25 bp)
CGAGTTCGACATGACAGAGGCGTTC
LOC_Os06g43370
OsAffx.15908.2.S1_x_at--114--3531Chr06:26072974..26072998 (25 bp)
CATGACAGAGGCGTTCGGCATCACG
LOC_Os06g43370
Target Sequence 
TTCGCGGAGCTAATCCGGAACCCGGCGGCGATGAAGAAGGCGACGGCCGAGGTTCGCCGTGACTTCGAGGCGGCCGGCGC
CGTGTCAGAGAGCGCGCTCGCCGTCGGCGAGCTCCCGTACCTTCGCCTCGTCGTCAGGGAGACGCTCCGGCTGCACCCGC
CGCTGCCGCTGCTGCTCCCGCGCGAGTGCCGGGAGCCGTGCCGGGTGCTCGGCTACGACGTGCCGCGCGGCGCGCAGGTG
CTGGTGAACGCCTGGGCGATCGGCCGCGACGAGCGGTACTGGCCCGGCGGCTCGCCGGAGGAGTTCCGGCCGGAGCGGTT
CGGCGACGGCGAGGCGGCCGCCGCGGTGGACTTCAAGGGCGCCGACTTCGAGCTCCTGCCGTTCGGCGGCGGCCGGCGGA
TGTGCCCCGGGATGGCGTTCGGGTTCGCAAACGTGGAGCTCCCACTCGCCAGCCTGCTCTTCCACATCGACTGGGAGGCC
TCCGGTGTGGCTGACCCGACCGAGTTCGACATGACAGAGGCGTTCGGCATCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15908.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis