Browse Element(s) Details


OsAffx.15908.3.S1_at

Description tigr:9634.m04189
TID=OsAffx.15908.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AF501300 flavonoid 3-hydroxylase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4338411/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43340OsAffx.20387.1.S1_x_at1/116+26051062..26056937retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g43350OsAffx.28078.1.S1_x_at11/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43350OsAffx.28078.1.S1_at11/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43350OsAffx.28081.1.S1_x_at1/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43350OsAffx.26754.1.S1_x_at1/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43350OsAffx.20024.1.S1_x_at1/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43360OsAffx.5089.1.S1_at11/116+26067995..26068468hypothetical protein
LOC_Os06g43370OsAffx.15908.2.S1_at11/116+26071381..26073061Cytochrome P450 family protein
LOC_Os06g43370OsAffx.15908.2.S1_x_at11/116+26071381..26073061Cytochrome P450 family protein
LOC_Os06g43370OsAffx.26754.1.S1_x_at1/116+26071381..26073061Cytochrome P450 family protein
LOC_Os06g43384OsAffx.15908.5.S1_at11/116+26081409..26086094Cytochrome P450 family protein, expressed
LOC_Os06g43384OsAffx.15908.3.S1_at11/116+26081409..26086094Cytochrome P450 family protein, expressed
LOC_Os06g43400OsAffx.15908.4.S1_at11/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43400OsAffx.28078.1.S1_x_at1/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43400OsAffx.15908.1.S1_x_at1/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43410OsAffx.15908.1.S1_x_at11/116+26091519..26093624Cytochrome P450 family protein, expressed
LOC_Os06g43420OsAffx.15909.1.S1_at11/116+26096157..26097854Cytochrome P450 family protein, expressed
LOC_Os06g43430Os.22415.1.S1_s_at11/116+26104134..26106279Cytochrome P450 family protein, expressed
LOC_Os06g43430Os.8493.1.A1_at11/116+26104134..26106279Cytochrome P450 family protein, expressed
LOC_Os06g43440OsAffx.5093.1.S1_at11/116+26107629..26108557Cytochrome P450 71D8, putative, expressed
LOC_Os06g43450NANA6+26110126..26113417retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15908.3.S1_at--866--1791Chr06:26085517..26085541 (25 bp)
ACCCGAAGGCCATGCGGAAGGCAAC
LOC_Os06g43384
OsAffx.15908.3.S1_at--1138--8611Chr06:26085577..26085601 (25 bp)
TGGTGTTGGAGAGCGCGCTCGGCAA
LOC_Os06g43384
OsAffx.15908.3.S1_at--567--9031Chr06:26085613..26085637 (25 bp)
TGCACCTCGTCATCCGAGAGACGTT
LOC_Os06g43384
OsAffx.15908.3.S1_at--715--551Chr06:26085624..26085648 (25 bp)
ATCCGAGAGACGTTCCGGCTACACA
LOC_Os06g43384
OsAffx.15908.3.S1_at--929--1391Chr06:26085631..26085655 (25 bp)
AGACGTTCCGGCTACACACGCCGTT
LOC_Os06g43384
OsAffx.15908.3.S1_at--112--8091Chr06:26085926..26085950 (25 bp)
GGAGCTCGCGCTCGCTAGCCTGCTA
LOC_Os06g43384
OsAffx.15908.3.S1_at--338--9351Chr06:26085937..26085961 (25 bp)
TCGCTAGCCTGCTATTCCACTTCGA
LOC_Os06g43384
OsAffx.15908.3.S1_at--94--8471Chr06:26085979..26086003 (25 bp)
TGGCCGACCCCGCTGAGTTTGACAT
LOC_Os06g43384
OsAffx.15908.3.S1_at--323--1811Chr06:26085985..26086009 (25 bp)
ACCCCGCTGAGTTTGACATGACTGA
LOC_Os06g43384
OsAffx.15908.3.S1_at--336--6851Chr06:26085995..26086019 (25 bp)
GTTTGACATGACTGAGGGATTTGGT
LOC_Os06g43384
OsAffx.15908.3.S1_at--765--6111Chr06:26086008..26086032 (25 bp)
GAGGGATTTGGTATCACCGCCCGCC
LOC_Os06g43384
Target Sequence 
ACCCGAAGGCCATGCGGAAGGCAACGGCCGAGGTGCGGCGTGCCTTCGCTGCGGACGGGGTGGTGTTGGAGAGCGCGCTC
GGCAAGCTCCACTACATGCACCTCGTCATCCGAGAGACGTTCCGGCTACACACGCCGTTGCCGCTGCTGCTGCCGCGTGA
GTGCCGGGAGCCGTGCCGGGTGCTCGGCTACGACGTGCCGCGCGGCACGCAGGTGCTGGTCAACGTCTGGGCAATCGGCC
GCGACGAGCGGTACTGGCCCGGCGGCTCGCCCGAGGAGTTCCGGCCAGAGCGGTTCGAAGACGGAGAGGCGGCCGCGGCG
GTGGATTTCAGGGGCGCCGACTTCGAGCTCCTGCCGTTTGGCGCTGGCCGGCGGATGTGCCCTGGGTTGGCGTTCGGGCT
CGCCAACGTGGAGCTCGCGCTCGCTAGCCTGCTATTCCACTTCGACTGGGAGGCGCCCGACGTGGCCGACCCCGCTGAGT
TTGACATGACTGAGGGATTTGGTATCACCGCCCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15908.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis