Browse Element(s) Details

OsAffx.15908.2.S1_at

Description

tigr:9634.m04187
TID=OsAffx.15908.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g43370	11/11	Cytochrome P450 family protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g43330	NA	NA	6	+	26047163..26050103	retrotransposon protein, putative, unclassified
LOC_Os06g43340	OsAffx.20387.1.S1_x_at	1/11	6	+	26051062..26056937	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g43350	OsAffx.28078.1.S1_x_at	11/11	6	+	26059869..26064360	Cytochrome P450 family protein, expressed
LOC_Os06g43350	OsAffx.28078.1.S1_at	11/11	6	+	26059869..26064360	Cytochrome P450 family protein, expressed
LOC_Os06g43350	OsAffx.28081.1.S1_x_at	1/11	6	+	26059869..26064360	Cytochrome P450 family protein, expressed
LOC_Os06g43350	OsAffx.26754.1.S1_x_at	1/11	6	+	26059869..26064360	Cytochrome P450 family protein, expressed
LOC_Os06g43350	OsAffx.20024.1.S1_x_at	1/11	6	+	26059869..26064360	Cytochrome P450 family protein, expressed
LOC_Os06g43360	OsAffx.5089.1.S1_at	11/11	6	+	26067995..26068468	hypothetical protein
LOC_Os06g43370	OsAffx.15908.2.S1_at	11/11	6	+	26071381..26073061	Cytochrome P450 family protein
LOC_Os06g43370	OsAffx.15908.2.S1_x_at	11/11	6	+	26071381..26073061	Cytochrome P450 family protein
LOC_Os06g43370	OsAffx.26754.1.S1_x_at	1/11	6	+	26071381..26073061	Cytochrome P450 family protein
LOC_Os06g43384	OsAffx.15908.5.S1_at	11/11	6	+	26081409..26086094	Cytochrome P450 family protein, expressed
LOC_Os06g43384	OsAffx.15908.3.S1_at	11/11	6	+	26081409..26086094	Cytochrome P450 family protein, expressed
LOC_Os06g43400	OsAffx.15908.4.S1_at	11/11	6	+	26088783..26089887	Cytochrome P450 71D7, putative
LOC_Os06g43400	OsAffx.28078.1.S1_x_at	1/11	6	+	26088783..26089887	Cytochrome P450 71D7, putative
LOC_Os06g43400	OsAffx.15908.1.S1_x_at	1/11	6	+	26088783..26089887	Cytochrome P450 71D7, putative
LOC_Os06g43410	OsAffx.15908.1.S1_x_at	11/11	6	+	26091519..26093624	Cytochrome P450 family protein, expressed
LOC_Os06g43420	OsAffx.15909.1.S1_at	11/11	6	+	26096157..26097854	Cytochrome P450 family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0019825	molecular_function	oxygen binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15908.2.S1_at--867--573	1	Chr06:26072506..26072530 (25 bp)	GACGGCCGAGGTTCGCCGTGACTTC	LOC_Os06g43370
OsAffx.15908.2.S1_at--831--423	1	Chr06:26072511..26072535 (25 bp)	CCGAGGTTCGCCGTGACTTCGAGGC	LOC_Os06g43370
OsAffx.15908.2.S1_at--414--425	1	Chr06:26072544..26072568 (25 bp)	CCGTGTCAGAGAGCGCGCTCGCCGT	LOC_Os06g43370
OsAffx.15908.2.S1_at--710--87	1	Chr06:26072940..26072964 (25 bp)	AGGCCTCCGGTGTGGCTGACCCGAC	LOC_Os06g43370
OsAffx.15908.2.S1_at--1149--865	1	Chr06:26072950..26072974 (25 bp)	TGTGGCTGACCCGACCGAGTTCGAC	LOC_Os06g43370
OsAffx.15908.2.S1_at--853--847	1	Chr06:26072952..26072976 (25 bp)	TGGCTGACCCGACCGAGTTCGACAT	LOC_Os06g43370
OsAffx.15908.2.S1_at--859--893	1	Chr06:26072956..26072980 (25 bp)	TGACCCGACCGAGTTCGACATGACA	LOC_Os06g43370
OsAffx.15908.2.S1_at--285--181	1	Chr06:26072958..26072982 (25 bp)	ACCCGACCGAGTTCGACATGACAGA	LOC_Os06g43370
OsAffx.15908.2.S1_at--123--409	1	Chr06:26072961..26072985 (25 bp)	CGACCGAGTTCGACATGACAGAGGC	LOC_Os06g43370
OsAffx.15908.2.S1_at--691--407	1	Chr06:26072965..26072989 (25 bp)	CGAGTTCGACATGACAGAGGCGTTC	LOC_Os06g43370
OsAffx.15908.2.S1_at--249--607	1	Chr06:26072966..26072990 (25 bp)	GAGTTCGACATGACAGAGGCGTTCG	LOC_Os06g43370

Target Sequence

GACGGCCGAGGTTCGCCGTGACTTCGAGGCGGCCGGCGCCGTGTCAGAGAGCGCGCTCGCCGTCGGCGAGCTCCCGTACC
TTCGCCTCGTCGTCAGGGAGACGCTCCGGCTGCACCCGCCGCTGCCGCTGCTGCTCCCGCGCGAGTGCCGGGAGCCGTGC
CGGGTGCTCGGCTACGACGTGCCGCGCGGCGCGCAGGTGCTGGTGAACGCCTGGGCGATCGGCCGCGACGAGCGGTACTG
GCCCGGCGGCTCGCCGGAGGAGTTCCGGCCGGAGCGGTTCGGCGACGGCGAGGCGGCCGCCGCGGTGGACTTCAAGGGCG
CCGACTTCGAGCTCCTGCCGTTCGGCGGCGGCCGGCGGATGTGCCCCGGGATGGCGTTCGGGTTCGCAAACGTGGAGCTC
CCACTCGCCAGCCTGCTCTTCCACATCGACTGGGAGGCCTCCGGTGTGGCTGACCCGACCGAGTTCGACATGACAGAGGC
GTTCG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis