Browse Element(s) Details


OsAffx.28078.1.S1_x_at

Description tigr:9634.m04185
TID=OsAffx.28078.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4335011/11Cytochrome P450 family protein, expressed
LOC_Os06g434001/11Cytochrome P450 71D7, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43320OsAffx.28078.1.S1_at1/116+26033893..26037159Cytochrome P450 family protein, expressed
LOC_Os06g43330NANA6+26047163..26050103retrotransposon protein, putative, unclassified
LOC_Os06g43340OsAffx.20387.1.S1_x_at1/116+26051062..26056937retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g43350OsAffx.28078.1.S1_x_at11/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43350OsAffx.28078.1.S1_at11/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43350OsAffx.28081.1.S1_x_at1/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43350OsAffx.26754.1.S1_x_at1/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43350OsAffx.20024.1.S1_x_at1/116+26059869..26064360Cytochrome P450 family protein, expressed
LOC_Os06g43360OsAffx.5089.1.S1_at11/116+26067995..26068468hypothetical protein
LOC_Os06g43370OsAffx.15908.2.S1_at11/116+26071381..26073061Cytochrome P450 family protein
LOC_Os06g43370OsAffx.15908.2.S1_x_at11/116+26071381..26073061Cytochrome P450 family protein
LOC_Os06g43370OsAffx.26754.1.S1_x_at1/116+26071381..26073061Cytochrome P450 family protein
LOC_Os06g43384OsAffx.15908.5.S1_at11/116+26081409..26086094Cytochrome P450 family protein, expressed
LOC_Os06g43384OsAffx.15908.3.S1_at11/116+26081409..26086094Cytochrome P450 family protein, expressed
LOC_Os06g43400OsAffx.15908.4.S1_at11/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43400OsAffx.28078.1.S1_x_at1/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43400OsAffx.15908.1.S1_x_at1/116+26088783..26089887Cytochrome P450 71D7, putative

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28078.1.S1_x_at--1136--491Chr06:26063770..26063794 (25 bp)
ATCGCTGAGCTAATCCGGAACCCGA
LOC_Os06g43350
OsAffx.28078.1.S1_x_at--847--551Chr06:26063782..26063806 (25 bp)
ATCCGGAACCCGATGGCGATGAAGA
LOC_Os06g43350
OsAffx.28078.1.S1_x_at--715--5151Chr06:26063826..26063850 (25 bp)
GCAAGCCTTCGCAGCGGCCGGCGTT
LOC_Os06g43350
OsAffx.28078.1.S1_x_at--53--4051Chr06:26063847..26063871 (25 bp)
CGTTGTGTCAGAGGCCGCGCTCAGT
LOC_Os06g43350
OsAffx.28078.1.S1_x_at--443--4811Chr06:26063865..26063889 (25 bp)
GCTCAGTGAGCTCCGATACCTGCAC
LOC_Os06g43350
OsAffx.28078.1.S1_x_at--226--3371Chr06:26064098..26064122 (25 bp)
CAGCCGCCGCGTTGGATTTCAAGGG
LOC_Os06g43350
OsAffx.28078.1.S1_x_at--726--1771Chr06:26064124..26064148 (25 bp)
ACCGACTACGAGCTTCTGCCGTTCG
LOC_Os06g43350
OsAffx.28078.1.S1_x_at--206--3291Chr06:26064226..26064250 (25 bp)
CACTTTGACTGGGAGGTGCCCGGAA
LOC_Os06g43350
OsAffx.28078.1.S1_x_at--105--1712Chr06:26089789..26089813 (25 bp)
ACCAAGCTCGACATGACTGAGGCGT
LOC_Os06g43400
OsAffx.28078.1.S1_x_at--669--4031Chr06:26064284..26064308 (25 bp)
CGTTCGGCATCGGTGTTCGCCGGAA
LOC_Os06g43350
OsAffx.28078.1.S1_x_at--6--9331Chr06:26064300..26064324 (25 bp)
TCGCCGGAAGGCTGACCTCATCATT
LOC_Os06g43350
Target Sequence 
ATCGCTGAGCTAATCCGGAACCCGATGGCGATGAAGAAGGCGACGGCCGAGGTGAGGCAAGCCTTCGCAGCGGCCGGCGT
TGTGTCAGAGGCCGCGCTCAGTGAGCTCCGATACCTGCACCTCGTCATCAAGGAGACGCTCCGTCTCCACCCACCGGGGC
CACTGCTGCTGCCGCGCGAGTGCCGGGAGCAGTGCAAGGTGCTCGGCTACGACGTGCCGCGCGGCACACAGGTGCTGGTC
AACGTCTGGGCGATCGGCCGCGACCCGCGGTACTGGCCTGGCGGCTCGCCCGAGGAGTTCCGGCCGGAGCGGTTCGGCGA
CGGCGAGCCAGCCGCCGCGTTGGATTTCAAGGGCACCGACTACGAGCTTCTGCCGTTCGGCGCCGGCCGGCGGATGTGCC
CCGGGTTGGCGTTCGGGCTCGCCAACGTGGAGCTCCCTCTCGCCAGCTTGCTCTTCCACTTTGACTGGGAGGTGCCCGGA
ATGGCCGACCCGACCAAGCTCGACATGACTGAGGCGTTCGGCATCGGTGTTCGCCGGAAGGCTGACCTCATCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28078.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis