Browse Element(s) Details


OsAffx.15908.1.S1_x_at

Description tigr:9634.m04191
TID=OsAffx.15908.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4341011/11Cytochrome P450 family protein, expressed
LOC_Os06g434001/11Cytochrome P450 71D7, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43360OsAffx.5089.1.S1_at11/116+26067995..26068468hypothetical protein
LOC_Os06g43370OsAffx.15908.2.S1_at11/116+26071381..26073061Cytochrome P450 family protein
LOC_Os06g43370OsAffx.15908.2.S1_x_at11/116+26071381..26073061Cytochrome P450 family protein
LOC_Os06g43370OsAffx.26754.1.S1_x_at1/116+26071381..26073061Cytochrome P450 family protein
LOC_Os06g43384OsAffx.15908.5.S1_at11/116+26081409..26086094Cytochrome P450 family protein, expressed
LOC_Os06g43384OsAffx.15908.3.S1_at11/116+26081409..26086094Cytochrome P450 family protein, expressed
LOC_Os06g43400OsAffx.15908.4.S1_at11/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43400OsAffx.28078.1.S1_x_at1/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43400OsAffx.15908.1.S1_x_at1/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43410OsAffx.15908.1.S1_x_at11/116+26091519..26093624Cytochrome P450 family protein, expressed
LOC_Os06g43420OsAffx.15909.1.S1_at11/116+26096157..26097854Cytochrome P450 family protein, expressed
LOC_Os06g43430Os.22415.1.S1_s_at11/116+26104134..26106279Cytochrome P450 family protein, expressed
LOC_Os06g43430Os.8493.1.A1_at11/116+26104134..26106279Cytochrome P450 family protein, expressed
LOC_Os06g43440OsAffx.5093.1.S1_at11/116+26107629..26108557Cytochrome P450 71D8, putative, expressed
LOC_Os06g43450NANA6+26110126..26113417retrotransposon protein, putative, unclassified
LOC_Os06g43460NANA6+26114047..26120202retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15908.1.S1_x_at--541--1611Chr06:26093041..26093065 (25 bp)
AGCTGATCCGGAACCCGACGGCCAT
LOC_Os06g43410
OsAffx.15908.1.S1_x_at--827--651Chr06:26093064..26093088 (25 bp)
ATGCACAAGGTGATGGCTGAGGTTC
LOC_Os06g43410
OsAffx.15908.1.S1_x_at--663--6231Chr06:26093075..26093099 (25 bp)
GATGGCTGAGGTTCGCCGTGCCTTC
LOC_Os06g43410
OsAffx.15908.1.S1_x_at--1082--7832Chr06:26093143..26093167 (25 bp)
GGTACCTGCAACTCGTCATCCGTGA
LOC_Os06g43410
OsAffx.15908.1.S1_x_at--437--2612Chr06:26093274..26093298 (25 bp)
AACGCCTGGGCGATCGGCCTCGACG
LOC_Os06g43410
OsAffx.15908.1.S1_x_at--287--5351Chr06:26093386..26093410 (25 bp)
GAACCGACTTCGAGTTCCTGCCGTT
LOC_Os06g43410
OsAffx.15908.1.S1_x_at--381--4171Chr06:26093474..26093498 (25 bp)
CGCCAGCTTGCTTTTCCACTTTGAT
LOC_Os06g43410
OsAffx.15908.1.S1_x_at--870--2031Chr06:26093491..26093515 (25 bp)
ACTTTGATTGGGAGGTGCCCGGCTT
LOC_Os06g43410
OsAffx.15908.1.S1_x_at--561--4271Chr06:26093523..26093547 (25 bp)
CCGGCCAAGCTCGACATGACAGAAG
LOC_Os06g43410
OsAffx.15908.1.S1_x_at--243--5651Chr06:26093540..26093564 (25 bp)
GACAGAAGCGTTCGGCATCACTGCA
LOC_Os06g43410
OsAffx.15908.1.S1_x_at--627--10611Chr06:26093550..26093574 (25 bp)
TTCGGCATCACTGCACGGCGGAAGG
LOC_Os06g43410
Target Sequence 
AGCTGATCCGGAACCCGACGGCCATGCACAAGGTGATGGCTGAGGTTCGCCGTGCCTTCGCCGCGGCCGGCGCCGTGTCA
GAGGACGCGCTCGGCGAGCTCCGGTACCTGCAACTCGTCATCCGTGAGACGCTCCGGCTACACCCTCCGCTGCCGCTGCT
GCTGCCACGCGAGTGCCGGGAGCCGTGCCGGGTGCTCGGCTACGACGTGACGCGCGGCACGCAGGTGCTGGTCAACGCCT
GGGCGATCGGCCTCGACGAGCGGTACTGGCCCGGCGGCTCGCCGGAGGAGTTCCGGCCGGAGCGGTTCGAGGACGGTGAG
GCGACGGCGGCGGTGGACTTCAGGGGAACCGACTTCGAGTTCCTGCCGTTTGGTGCTGGGCGGCGAATGTGCCCAGGGAT
GGCGTTCGGGCTCGCCAACGTGGAGCTCCCTCTCGCCAGCTTGCTTTTCCACTTTGATTGGGAGGTGCCCGGCTTGGCCG
ACCCGGCCAAGCTCGACATGACAGAAGCGTTCGGCATCACTGCACGGCGGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15908.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis