Browse Element(s) Details


Os.8493.1.A1_at

Description gb:CB660020
DB_XREF= gi:29663745
DB_XREF=OSJNEd01G23.r
CLONE=OSJNEd01G23
TID=Os.8493.1
CNT=9
FEA=EST
TIER=Stack
STK=6
UG=Os.8493 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein sp:Q9LTM0 (A.thaliana) C72N_ARATH Cytochrome P450 71B23
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4343011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43384OsAffx.15908.5.S1_at11/116+26081409..26086094Cytochrome P450 family protein, expressed
LOC_Os06g43384OsAffx.15908.3.S1_at11/116+26081409..26086094Cytochrome P450 family protein, expressed
LOC_Os06g43400OsAffx.15908.4.S1_at11/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43400OsAffx.28078.1.S1_x_at1/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43400OsAffx.15908.1.S1_x_at1/116+26088783..26089887Cytochrome P450 71D7, putative
LOC_Os06g43410OsAffx.15908.1.S1_x_at11/116+26091519..26093624Cytochrome P450 family protein, expressed
LOC_Os06g43420OsAffx.15909.1.S1_at11/116+26096157..26097854Cytochrome P450 family protein, expressed
LOC_Os06g43430Os.22415.1.S1_s_at11/116+26104134..26106279Cytochrome P450 family protein, expressed
LOC_Os06g43430Os.8493.1.A1_at11/116+26104134..26106279Cytochrome P450 family protein, expressed
LOC_Os06g43440OsAffx.5093.1.S1_at11/116+26107629..26108557Cytochrome P450 71D8, putative, expressed
LOC_Os06g43450NANA6+26110126..26113417retrotransposon protein, putative, unclassified
LOC_Os06g43460NANA6+26114047..26120202retrotransposon protein, putative, unclassified
LOC_Os06g43470OsAffx.5094.1.S1_at11/116+26122170..26123153Cytochrome P450 71D10, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8493.1.A1_at--149--10751Chr06:26104680..26104704 (25 bp)
TTGAACTACATGCACCTTGTCATCA
LOC_Os06g43430
Os.8493.1.A1_at--94--4471Chr06:26104627..26104651 (25 bp)
GCCTCTACTACTGCCACGGGAGTGT
LOC_Os06g43430
Os.8493.1.A1_at--224--1911Chr06:26104612..26104636 (25 bp)
ACGGGAGTGTAGAAACACCTGCCAA
LOC_Os06g43430
Os.8493.1.A1_at--275--2151Chr06:26104598..26104622 (25 bp)
ACACCTGCCAAGTCTTAGGATTCGA
LOC_Os06g43430
Os.8493.1.A1_at--1085--7131Chr06:26104587..26104611 (25 bp)
GTCTTAGGATTCGATGTGCCCAAAG
LOC_Os06g43430
Os.8493.1.A1_at--1009--8691Chr06:26104573..26104597 (25 bp)
TGTGCCCAAAGGAGCAATGGTGCTT
LOC_Os06g43430
Os.8493.1.A1_at--254--8631Chr06:26104539..26104563 (25 bp)
TGGGCGATTAGCAGGGACCCTCAGT
LOC_Os06g43430
Os.8493.1.A1_at--1126--2971Chr06:26104411..26104435 (25 bp)
AATGTGCCCTGGCATCGCATTTGGT
LOC_Os06g43430
Os.8493.1.A1_at--446--8571Chr06:26104319..26104343 (25 bp)
TGGATACTGCGGATCTAGACATGAC
LOC_Os06g43430
Os.8493.1.A1_at--241--5751Chr06:26104271..26104295 (25 bp)
GACGGCTCCATGACCTTTTACTTGT
LOC_Os06g43430
Os.8493.1.A1_at--766--3511Chr06:26104263..26104287 (25 bp)
CATGACCTTTTACTTGTTCCTGTGG
LOC_Os06g43430
Target Sequence 
TTGAACTACATGCACCTTGTCATCAAGGAGGCGTTGCGGCTGCATCCTCCTGTGCCTCTACTACTGCCACGGGAGTGTAG
AAACACCTGCCAAGTCTTAGGATTCGATGTGCCCAAAGGAGCAATGGTGCTTGTGAACGCGTGGGCGATTAGCAGGGACC
CTCAGTATTGGGATGAACCCGAGGAATTTATCCCTGAGAGGTTTGAGGATAGCAACATTGATTTCAAGGGGACAAACTTT
GAGTACACACCATTCGGGGCAGGACGAAGAATGTGCCCTGGCATCGCATTTGGTCTGGCAAATGTAGAGCTTATGCTCGC
AAGCCTCCTATACCATTTCAACTGGCAATTGCCAGATGGGATGGATACTGCGGATCTAGACATGACGGAGGAGATGGTGG
TTAGTGCCCGACGGCTCCATGACCTTTTACTTGTTCCTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8493.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis