Browse Element(s) Details


OsAffx.26754.1.S1_x_at

Description tigr:9633.m00530
TID=OsAffx.26754.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ubiquitin-conjugating enzyme, 5 partial, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0612011/11Ubiquitin-conjugating enzyme family protein
LOC_Os09g311201/11Pirin-like protein At1g50590, putative, expressed
LOC_Os06g433701/11Cytochrome P450 family protein
LOC_Os06g433501/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06050NANA5+3008942..3011231Core-2/I-Branching enzyme family protein
LOC_Os05g06060OsAffx.14566.2.S1_at11/115+3014115..3015245hypothetical protein
LOC_Os05g06070OsAffx.14566.1.S1_at11/115+3016670..3017698seven in absentia, putative
LOC_Os05g06080OsAffx.4259.1.S1_at9/115+3020176..3021214hypothetical protein
LOC_Os05g06080OsAffx.14566.1.S1_at1/115+3020176..3021214hypothetical protein
LOC_Os05g06090OsAffx.22217.1.S1_x_at1/115+3022404..3022981hypothetical protein
LOC_Os05g06100NANA5+3023940..3025073seven in absentia, putative
LOC_Os05g06110Os.5079.1.S1_at11/115+3028794..3035004Villin-1, putative, expressed
LOC_Os05g06120OsAffx.26754.1.S1_x_at11/115+3035879..3039886Ubiquitin-conjugating enzyme family protein
LOC_Os05g06130Os.25501.1.S1_at11/115+3040871..3045616XS domain containing protein, expressed
LOC_Os05g06140OsAffx.26755.1.S1_at11/115+3047971..3052410Lipase family protein, expressed
LOC_Os05g06150Os.55427.1.S1_at11/115+3061825..3063522pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010244biological_processresponse to low fluence blue light
GO:0004840molecular_functionubiquitin conjugating enzyme activity
GO:0005516molecular_functioncalmodulin binding
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26754.1.S1_x_at--471--9711Chr05:3039354..3039378 (25 bp)
TCAACACGTTCGACGGCGAGGGCGT
LOC_Os05g06120
OsAffx.26754.1.S1_x_at--450--4652Chr09:18708794..18708852 (25 bp)
GCGTCGAGGTGTGGTCGCCGGCGAG
LOC_Os09g31120
OsAffx.26754.1.S1_x_at--619--6151Chr05:3039397..3039421 (25 bp)
GAGGTCGACGCTGCTCCAGGTGCTC
LOC_Os05g06120
OsAffx.26754.1.S1_x_at--1092--1031Chr05:3039414..3039438 (25 bp)
AGGTGCTCGTCTCCATCCAGGGCCT
LOC_Os05g06120
OsAffx.26754.1.S1_x_at--1160--4291Chr05:3039456..3039480 (25 bp)
CCTACTACAACGAGGCCGGCTACGA
LOC_Os05g06120
OsAffx.26754.1.S1_x_at--377--4271Chr05:3039648..3039672 (25 bp)
CCTGCGAGTCGTACCTGCGGGGAAC
LOC_Os05g06120
OsAffx.26754.1.S1_x_at--454--10531Chr05:3039731..3039755 (25 bp)
TTCAGGCTCGCGCTGCGCAACGTCG
LOC_Os05g06120
OsAffx.26754.1.S1_x_at--387--9151Chr05:3039744..3039768 (25 bp)
TGCGCAACGTCGTGCCGGTGCTCGC
LOC_Os05g06120
OsAffx.26754.1.S1_x_at--228--7473Chr06:26072777..26072797 (21 bp)
GTGTGAGCGGTTCGGCGACGGCGAG
LOC_Os06g43370
OsAffx.26754.1.S1_x_at--254--1951Chr05:3039816..3039840 (25 bp)
ACGGCGAGCTCGGACAGTGCTCTCT
LOC_Os05g06120
OsAffx.26754.1.S1_x_at--792--2131Chr05:3039829..3039853 (25 bp)
ACAGTGCTCTCTCACCGCCATTGAT
LOC_Os05g06120
Target Sequence 
TCAACACGTTCGACGGCGAGGGCGTCGAGGTGTGGTCGCCGGCGAGGTCGACGCTGCTCCAGGTGCTCGTCTCCATCCAG
GGCCTCGTCCTCACCGCCGACCCCTACTACAACGAGGCCGGCTACGACGCCTACGCCGGCACGCCGGGGGGCCGCCGGAA
CGCCGCCTCCTACGCCGAGAACGCCTGCCTGCTCACGCTCCGGAGCGCGCTCCACCTCCTCCGCCGCCCGCCGCGGGGCT
TCGAGGGCGTCGTCGGGGCACACTTCCGCCGCCGCGGCGCCCACGTGCTCGCCGCCTGCGAGTCGTACCTGCGGGGAACG
CGCGTCGCCGGAGACGGGGGAGACGGCGGCGGCGGCGAGAGGACGTGCTCGGCGGGGTTCAGGCTCGCGCTGCGCAACGT
CGTGCCGGTGCTCGCGGCGGCGTTCGCGGAGATCGGCGTCGAGGGGTGTGAGCGGTTCGGCGACGGCGAGCTCGGACAGT
GCTCTCTCACCGCCATTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26754.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis