Browse Element(s) Details


Os.55427.1.S1_at

Description gb:AK108071.1
DB_XREF= gi:32993280
TID=Os.55427.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-C07, full insert sequence.
FL= gb:AK108071.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0615011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06120OsAffx.26754.1.S1_x_at11/115+3035879..3039886Ubiquitin-conjugating enzyme family protein
LOC_Os05g06130Os.25501.1.S1_at11/115+3040871..3045616XS domain containing protein, expressed
LOC_Os05g06140OsAffx.26755.1.S1_at11/115+3047971..3052410Lipase family protein, expressed
LOC_Os05g06150Os.55427.1.S1_at11/115+3061825..3063522pentatricopeptide, putative, expressed
LOC_Os05g06160Os.21893.3.A1_at5/115+3069639..3073374Trehalose-phosphatase family protein, expressed
LOC_Os05g06170OsAffx.14528.3.S1_x_at11/115+3074850..3076884hypothetical protein
LOC_Os05g06170OsAffx.14528.3.S1_at11/115+3074850..3076884hypothetical protein
LOC_Os05g06170Os.13877.1.S1_at3/115+3074850..3076884hypothetical protein
LOC_Os05g06170OsAffx.14528.1.S1_x_at3/115+3074850..3076884hypothetical protein
LOC_Os05g06170OsAffx.14528.2.S1_x_at1/115+3074850..3076884hypothetical protein
LOC_Os05g06180OsAffx.1516.1.S1_x_at1/115+3078207..3078608hypothetical protein
LOC_Os05g06190OsAffx.14568.2.S1_at11/115+3083758..3085703hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55427.1.S1_at--594--8711Chr05:3062940..3062964 (25 bp)
TGTCGCATATCTTGCAGTGCTATCA
LOC_Os05g06150
Os.55427.1.S1_at--491--10171Chr05:3062960..3062984 (25 bp)
TATCAGCTTGTAGCCATAGCGGACT
LOC_Os05g06150
Os.55427.1.S1_at--959--2791Chr05:3063040..3063064 (25 bp)
AAGATGCAGCCTGAGCACTATGGTT
LOC_Os05g06150
Os.55427.1.S1_at--1055--9511Chr05:3063075..3063099 (25 bp)
TCTCTTATGCAGGAGCGGTTACCTA
LOC_Os05g06150
Os.55427.1.S1_at--606--591Chr05:3063127..3063151 (25 bp)
ATGCCATTTGAGTCCAGTATTGCTG
LOC_Os05g06150
Os.55427.1.S1_at--829--9111Chr05:3063147..3063171 (25 bp)
TGCTGCTTGGAGTGCTCTACTCAAT
LOC_Os05g06150
Os.55427.1.S1_at--812--591Chr05:3063191..3063215 (25 bp)
ATGCTAAACTTGGTCAACTTGCGGC
LOC_Os05g06150
Os.55427.1.S1_at--490--5151Chr05:3063251..3063275 (25 bp)
GCAACTGGGTTGCTCTATCAAATGT
LOC_Os05g06150
Os.55427.1.S1_at--877--8871Chr05:3063378..3063402 (25 bp)
TGATGGAGTCCATGTCTTTCTAATG
LOC_Os05g06150
Os.55427.1.S1_at--711--6871Chr05:3063433..3063457 (25 bp)
GTATTGCAGACTCTTGATTCACTAA
LOC_Os05g06150
Os.55427.1.S1_at--11--7911Chr05:3063473..3063497 (25 bp)
GGTTGATGCCTACATGAGGTCCATA
LOC_Os05g06150
Target Sequence 
TGTCGCATATCTTGCAGTGCTATCAGCTTGTAGCCATAGCGGACTTGTGAAAGAAGGCTGGAACTACTTCAAGTTGATGT
TTCATGGTCAGAACTCAGTTAAGATGCAGCCTGAGCACTATGGTTGTATGGCAGATCTCTTATGCAGGAGCGGTTACCTA
GAAGAAGCTCTTGATTTCATTACAAATATGCCATTTGAGTCCAGTATTGCTGCTTGGAGTGCTCTACTCAATTCATGTAG
AATCCACGGGAATGCTAAACTTGGTCAACTTGCGGCATCCCGTCTGGTCCAGCTTGATCCAGAGAATCACAGCAACTGGG
TTGCTCTATCAAATGTACATGCATCGGAAAGCGATTGGCATGAGACCTGGATGATCAGAGAGAGCATGAGCATAGAGTGT
GTGAAGAAAGAGCCTGGATGTAGTTGGGTTGAGTTGCATGATGGAGTCCATGTCTTTCTAATGGCTGACCAATCTCAGCC
TGAATTAGTTGATGTATTGCAGACTCTTGATTCACTAAAAGAGGATATATATTGGTTGATGCCTACATGAGGTCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis