Browse Element(s) Details


OsAffx.14568.2.S1_at

Description tigr:9633.m00537
TID=OsAffx.14568.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0619011/11hypothetical protein
LOC_Os05g509901/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06150Os.55427.1.S1_at11/115+3061825..3063522pentatricopeptide, putative, expressed
LOC_Os05g06160Os.21893.3.A1_at5/115+3069639..3073374Trehalose-phosphatase family protein, expressed
LOC_Os05g06170OsAffx.14528.3.S1_x_at11/115+3074850..3076884hypothetical protein
LOC_Os05g06170OsAffx.14528.3.S1_at11/115+3074850..3076884hypothetical protein
LOC_Os05g06170Os.13877.1.S1_at3/115+3074850..3076884hypothetical protein
LOC_Os05g06170OsAffx.14528.1.S1_x_at3/115+3074850..3076884hypothetical protein
LOC_Os05g06170OsAffx.14528.2.S1_x_at1/115+3074850..3076884hypothetical protein
LOC_Os05g06180OsAffx.1516.1.S1_x_at1/115+3078207..3078608hypothetical protein
LOC_Os05g06190OsAffx.14568.2.S1_at11/115+3083758..3085703hypothetical protein
LOC_Os05g06200OsAffx.22179.1.S1_at6/115+3098006..3100924transposon protein, putative, Mutator sub-class
LOC_Os05g06200OsAffx.23752.1.S1_at1/115+3098006..3100924transposon protein, putative, Mutator sub-class
LOC_Os05g06210NANA5+3105157..3105534transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g06220OsAffx.4261.1.S1_at11/115+3106147..3107207hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14568.2.S1_at--615--2631Chr05:3084911..3084935 (25 bp)
AACCACCTTTCCCAGGAGCATGGAG
LOC_Os05g06190
OsAffx.14568.2.S1_at--1151--831Chr05:3084930..3085067 (25 bp)
ATGGAGCAGCACCAAGCTACCCTGT
LOC_Os05g06190
OsAffx.14568.2.S1_at--201--10031Chr05:3085068..3085092 (25 bp)
TAGAACAGGCTTGGAGTACTGCAAT
LOC_Os05g06190
OsAffx.14568.2.S1_at--714--6992Chr05:3085083..3085107 (25 bp)
GTACTGCAATGCAAGGTCCTGTCAT
LOC_Os05g06190
OsAffx.14568.2.S1_at--1150--5171Chr05:3085093..3085117 (25 bp)
GCAAGGTCCTGTCATAATGCTCCAG
LOC_Os05g06190
OsAffx.14568.2.S1_at--169--9771Chr05:3085107..3085226 (25 bp)
TAATGCTCCAGGTAGCGGGAAATCG
LOC_Os05g06190
OsAffx.14568.2.S1_at--528--3071Chr05:3085417..3085441 (25 bp)
AATCAGACATCGTATGTGCCGCACC
LOC_Os05g06190
OsAffx.14568.2.S1_at--503--4031Chr05:3085427..3085451 (25 bp)
CGTATGTGCCGCACCATTGGTGAAT
LOC_Os05g06190
OsAffx.14568.2.S1_at--238--3151Chr05:3085486..3085510 (25 bp)
AATTCAAATTCAGCTCACCCTCAAT
LOC_Os05g06190
OsAffx.14568.2.S1_at--835--8071Chr05:3085601..3085625 (25 bp)
GGAGCTCAGCTATCATATCAACCTT
LOC_Os05g06190
OsAffx.14568.2.S1_at--618--7411Chr05:3085645..3085669 (25 bp)
GTGTTGGGAGCAAATCTCTCGCACA
LOC_Os05g06190
Target Sequence 
AACCACCTTTCCCAGGAGCATGGAGCAGCACCAAGCTACCCTGTTAGAACAGGCTTGGAGTACTGCAATGCAAGGTCCTG
TCATAATGCTCCAGGTAGCGGGAAATCGATAGCGATATCATTGCTTCAGAGGTTCTATGATCCGAATGTAGGCCATATAC
TTCTAGATGGAGTGGACATTCAAAAGTTTCAGCTAAGGTGGCTAAGGCAACAGATGGGTCTGGTGAGCCAAGAACCAGCT
CTGTTCAATGACACGATTCGCGCAAACATCGCATATGGGAAGCAAGGGGAGGTGATAGAATCAGACATCGTATGTGCCGC
ACCATTGGTGAATGCACACAAGTTCATCAGCTCATTGCATCAGGTGAAATTCAAATTCAGCTCACCCTCAATCATTGAGA
CATGGTGTTCATGTTTTCCGACAGAAAATGTGTCACCTGAAGAAACAAAATGCAGGGATATGGAACCATGGTCGGGGAGC
GTGGAGCTCAGCTATCATATCAACCTTAGGTTGTGTATGTTAGATGGTGTTGGGAGCAAATCTCTCGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14568.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis