Browse Element(s) Details


OsAffx.4261.1.S1_at

Description tigr:9633.m00540
TID=OsAffx.4261.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0622011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06190OsAffx.14568.2.S1_at11/115+3083758..3085703hypothetical protein
LOC_Os05g06200OsAffx.22179.1.S1_at6/115+3098006..3100924transposon protein, putative, Mutator sub-class
LOC_Os05g06200OsAffx.23752.1.S1_at1/115+3098006..3100924transposon protein, putative, Mutator sub-class
LOC_Os05g06210NANA5+3105157..3105534transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g06220OsAffx.4261.1.S1_at11/115+3106147..3107207hypothetical protein
LOC_Os05g06230OsAffx.4262.1.S1_at11/115+3131123..3134084hypothetical protein
LOC_Os05g06230Os.37711.1.S1_at1/115+3131123..3134084hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4261.1.S1_at--640--3071Chr05:3107016..3107040 (25 bp)
AATAACGTCATTATGGTTCTTGCCA
LOC_Os05g06220
OsAffx.4261.1.S1_at--900--1891Chr05:3107020..3107044 (25 bp)
ACGTCATTATGGTTCTTGCCAACGA
LOC_Os05g06220
OsAffx.4261.1.S1_at--395--151Chr05:3107025..3107049 (25 bp)
ATTATGGTTCTTGCCAACGAGTTCA
LOC_Os05g06220
OsAffx.4261.1.S1_at--826--9491Chr05:3107053..3107077 (25 bp)
TCTCGCCTTTCTTCCAACAAACTAG
LOC_Os05g06220
OsAffx.4261.1.S1_at--170--9272Chr05:3107062..3107086 (25 bp)
TCTTCCAACAAACTAGAATTCCCTT
LOC_Os05g06220
OsAffx.4261.1.S1_at--855--9231Chr05:3107086..3107110 (25 bp)
TCCTTTCCGAAGGTCTTGGGATTCA
LOC_Os05g06220
OsAffx.4261.1.S1_at--170--9291Chr05:3107091..3107115 (25 bp)
TCCGAAGGTCTTGGGATTCAGATCC
LOC_Os05g06220
OsAffx.4261.1.S1_at--209--7671Chr05:3107103..3107127 (25 bp)
GGGATTCAGATCCAGCATGGGCTCA
LOC_Os05g06220
OsAffx.4261.1.S1_at--853--10531Chr05:3107107..3107131 (25 bp)
TTCAGATCCAGCATGGGCTCAGTGG
LOC_Os05g06220
OsAffx.4261.1.S1_at--66--9231Chr05:3107113..3107137 (25 bp)
TCCAGCATGGGCTCAGTGGATCTGT
LOC_Os05g06220
OsAffx.4261.1.S1_at--486--3451Chr05:3107126..3107150 (25 bp)
CAGTGGATCTGTGGCGGCTAGGAGC
LOC_Os05g06220
Target Sequence 
AATAACGTCATTATGGTTCTTGCCAACGAGTTCAAGCTCTCGCCTTTCTTCCAACAAACTAGAATTCCCTTCCTTTCCGA
AGGTCTTGGGATTCAGATCCAGCATGGGCTCAGTGGATCTGTGGCGGCTAGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis