Browse Element(s) Details


OsAffx.4262.1.S1_at

Description tigr:9633.m00541
TID=OsAffx.4262.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0623011/11hypothetical protein
LOC_Os10g213901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06220OsAffx.4261.1.S1_at11/115+3106147..3107207hypothetical protein
LOC_Os05g06230OsAffx.4262.1.S1_at11/115+3131123..3134084hypothetical protein
LOC_Os05g06230Os.37711.1.S1_at1/115+3131123..3134084hypothetical protein
LOC_Os05g06240OsAffx.14569.1.S1_at11/115+3134563..3136250Leucine Rich Repeat family protein
LOC_Os05g06250OsAffx.26756.1.S1_at10/115+3156894..3158960hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4262.1.S1_at--270--8133Chr08:3574839..3575352 (25 bp)
GGAAAACTCCACAGAGTAAACTCGT
NONE
OsAffx.4262.1.S1_at--993--2371Chr05:3132168..3132650 (25 bp)
AAACTAGACGGTGTCTTGATGCCTC
LOC_Os05g06230
OsAffx.4262.1.S1_at--309--10031Chr05:3132172..3132654 (25 bp)
TAGACGGTGTCTTGATGCCTCCGGA
LOC_Os05g06230
OsAffx.4262.1.S1_at--396--4291Chr05:3132647..3132671 (25 bp)
CCTCCGGAGAGTATTACCATGATGG
LOC_Os05g06230
OsAffx.4262.1.S1_at--330--151Chr05:3132659..3132683 (25 bp)
ATTACCATGATGGATCGCAAGTCAA
LOC_Os05g06230
OsAffx.4262.1.S1_at--440--6031Chr05:3133481..3133839 (25 bp)
GAGATAAGTCTAACCGGCGAGTCAC
LOC_Os05g06230
OsAffx.4262.1.S1_at--656--5011Chr05:3133857..3133881 (25 bp)
GCAGAGACAGGAGGCAGAGACATCT
LOC_Os05g06230
OsAffx.4262.1.S1_at--937--1351Chr05:3133872..3133896 (25 bp)
AGAGACATCTTTGGGCGGTTCGACC
LOC_Os05g06230
OsAffx.4262.1.S1_at--903--9652Chr12:6567694..6567785 (24 bp)
TCAGACCGGCAGCATAGGCACGGTA
NONE
OsAffx.4262.1.S1_at--505--8252Chr05:3133920..3134031 (25 bp)
GGCAGCATAGGCACGGTACTACAAC
LOC_Os05g06230
OsAffx.4262.1.S1_at--787--10092Chr10:10614611..10615030 (25 bp)
TAGGCACGGTACTACAACCATTCAC
LOC_Os10g21390
Target Sequence 
GGAAAACTCCACAGAGTAAACTCGTTACTTTTGAAACGCGGGGAGACACTAGAAATACAGAAAACTCGAAAAGAAAAACT
AGACGGTGTCTTGATGCCTCCGGAGAGTATTACCATGATGGATCGCAAGTCAACTTGGAGATAAGTCTAACCGGCGAGTC
ACCGGTGGTCAGACCAGCGGCAGAGACAGGAGGCAGAGACATCTTTGGGCGGTTCGACCGGGCGATCTACACCGGTCAGA
CCGGCAGCATAGGCACGGTACTACAACCATTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4262.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis