Browse Element(s) Details


OsAffx.26756.1.S1_at

Description tigr:9633.m00543
TID=OsAffx.26756.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0625010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06230OsAffx.4262.1.S1_at11/115+3131123..3134084hypothetical protein
LOC_Os05g06230Os.37711.1.S1_at1/115+3131123..3134084hypothetical protein
LOC_Os05g06240OsAffx.14569.1.S1_at11/115+3134563..3136250Leucine Rich Repeat family protein
LOC_Os05g06250OsAffx.26756.1.S1_at10/115+3156894..3158960hypothetical protein
LOC_Os05g06260Os.16079.1.S1_at9/115+3159599..3166113Gamma-tubulin complex component 4 homolog, putative, expressed
LOC_Os05g06270Os.8381.1.S1_at11/115+3167813..3173736VIP2 protein, putative, expressed
LOC_Os05g06280Os.8608.2.S1_x_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280OsAffx.26757.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.8608.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.9766.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.8608.1.S1_a_at11/115+3181348..3192111kinesin motor family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26756.1.S1_at--303--8371Chr05:3157425..3157449 (25 bp)
GGCGTCTACCGCATGAGCTGGTCGT
LOC_Os05g06250
OsAffx.26756.1.S1_at--553--971Chr05:3157456..3157480 (25 bp)
AGGAGTGGTCCAGGGTTCACTGCTC
LOC_Os05g06250
OsAffx.26756.1.S1_at--55--10531Chr05:3157471..3157495 (25 bp)
TTCACTGCTCTAGCGGCTGCATCAA
LOC_Os05g06250
OsAffx.26756.1.S1_at--627--7231NONE
GTCGCCGAGGCACGCATAAAGTTTC
NONE
OsAffx.26756.1.S1_at--526--2332Chr05:3158121..3158145 (25 bp)
AAAGTTTCTCCAACTCCTAGATCAC
LOC_Os05g06250
OsAffx.26756.1.S1_at--333--451Chr05:3158174..3158198 (25 bp)
ATCTATGCCTCGGATCTGATCGTGC
LOC_Os05g06250
OsAffx.26756.1.S1_at--669--3751Chr05:3158271..3158295 (25 bp)
CTCGTTGACTTCACCAATTCTGACA
LOC_Os05g06250
OsAffx.26756.1.S1_at--914--3171Chr05:3158285..3158309 (25 bp)
CAATTCTGACAACCCCAATGAGCTC
LOC_Os05g06250
OsAffx.26756.1.S1_at--943--2371Chr05:3158503..3158527 (25 bp)
AAACGATGCACCCAACCGTTACAGA
LOC_Os05g06250
OsAffx.26756.1.S1_at--219--8731Chr05:3158864..3158888 (25 bp)
TGTCACTGACGGTGCAGCCAGGGAT
LOC_Os05g06250
OsAffx.26756.1.S1_at--348--3471Chr05:3158882..3158906 (25 bp)
CAGGGATGGACCAGGCCGTCGCCAT
LOC_Os05g06250
Target Sequence 
GGCGTCTACCGCATGAGCTGGTCGTGCCGGGAGGAGTGGTCCAGGGTTCACTGCTCTAGCGGCTGCATCAACTCCCTCGT
CGCCGAGGCACGCATAAAGTTTCTCCAACTCCTAGATCACCCACCACGCCGAGACCAACCACCTCCTCATCTATGCCTCG
GATCTGATCGTGCTCGGACTCACCCCTCCTCTCTTTCCTCCCTCTTCACCTACAATACCACCAAGCTCACCGCGTTGCCT
CTCTCCTCGTTGACTTCACCAATTCTGACAACCCCAATGAGCTCGCCAACCTCCAGATCTGGTGTAGGAAGGGAGAAAGT
GGGTGGGGATACCTTGGGTGTAAGGGATGATGATCGAGGAGTTGAGAAAGTGGAGGAAATAAAATATTATAACAACTCTG
CACAAAACGATGCACCCAACCGTTACAGAGGTGAGAAGGAAGAGAGGCGGGCCGAGGAAGACGACGCTGCTGGGGAAGGA
CGTGTTGTCACTGACGGTGCAGCCAGGGATGGACCAGGCCGTCGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26756.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis