Browse Element(s) Details


Os.9766.1.S1_at

Description gb:AK102716.1
DB_XREF= gi:32987925
TID=Os.9766.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9766 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative small nuclear ribonucleoprotein U1A (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105D18, full insert sequence.
FL= gb:AK102716.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0628011/11kinesin motor family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06250OsAffx.26756.1.S1_at10/115+3156894..3158960hypothetical protein
LOC_Os05g06260Os.16079.1.S1_at9/115+3159599..3166113Gamma-tubulin complex component 4 homolog, putative, expressed
LOC_Os05g06270Os.8381.1.S1_at11/115+3167813..3173736VIP2 protein, putative, expressed
LOC_Os05g06280Os.8608.2.S1_x_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280OsAffx.26757.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.8608.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.9766.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.8608.1.S1_a_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06290Os.11275.1.S1_at11/115+3192180..3194361expressed protein
LOC_Os05g06300Os.32913.1.S1_at11/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06300Os.54503.1.A1_at5/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06300Os.54371.1.S1_x_at1/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06310Os.12160.1.S1_at11/115+3208318..321093960S ribosomal protein L18, putative, expressed
LOC_Os05g06320Os.7454.1.S1_a_at11/115+3211013..3215401Ethylene receptor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000398biological_processnuclear mRNA splicing, via spliceosome
GO:0005634cellular_componentnucleus
GO:0005654cellular_componentnucleoplasm
GO:0005685cellular_componentsnRNP U1
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0015030cellular_componentCajal body
GO:0003723molecular_functionRNA binding
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9766.1.S1_at--1022--3632Chr05:3190816..3190840 (25 bp)
CTTAGGTGTGAATGCTTACCCCGGT
LOC_Os05g06280
Os.9766.1.S1_at--530--10451Chr05:3190831..3190855 (25 bp)
TTACCCCGGTGTTTATGGAGCTCCT
LOC_Os05g06280
Os.9766.1.S1_at--684--1551Chr05:3191567..3191591 (25 bp)
AGCTACCTTTTGCTGGCGCACAGAA
LOC_Os05g06280
Os.9766.1.S1_at--1123--691Chr05:3191651..3191675 (25 bp)
ATGAGACGACCCCTATGATGCTTCA
LOC_Os05g06280
Os.9766.1.S1_at--905--6331Chr05:3191667..3191691 (25 bp)
GATGCTTCAGATGCTCTTCTGTCAG
LOC_Os05g06280
Os.9766.1.S1_at--1137--4471Chr05:3191730..3191754 (25 bp)
GCCTGGGATTGCTTTCGTGGAGTAC
LOC_Os05g06280
Os.9766.1.S1_at--1043--6911Chr05:3191880..3191904 (25 bp)
GTAGTCCCAAGTTTTCGCATAATCC
LOC_Os05g06280
Os.9766.1.S1_at--76--6751Chr05:3191946..3191970 (25 bp)
GTTAATGTACTACTGCTCAGCTGCC
LOC_Os05g06280
Os.9766.1.S1_at--324--3391Chr05:3191963..3191987 (25 bp)
CAGCTGCCCGTGTGTGTTTCAGGAA
LOC_Os05g06280
Os.9766.1.S1_at--536--211Chr05:3191997..3192021 (25 bp)
ATTTGAACCATCTTTGCAGTCGTGA
LOC_Os05g06280
Os.9766.1.S1_at--262--5031Chr05:3192012..3192036 (25 bp)
GCAGTCGTGAGTTCTCCTAGTTAGT
LOC_Os05g06280
Target Sequence 
CTTAGGTGTGAATGCTTACCCCGGTGTTTATGGAGCTCCTCCGCTCTCTCAGCTACCTTTTGCTGGCGCACAGAAGGTCA
TGATGCCGGAGATAATTGTACCGAATAACATCCTCTTCGTCCAAAACCTCCCACATGAGACGACCCCTATGATGCTTCAG
ATGCTCTTCTGTCAGTACCCAGGGTTCAAGGAAGTCAGAATGGTTGAAGCAAAGCCTGGGATTGCTTTCGTGGAGTACGG
CGACGAGGGGCAGGCTACCGCTGCCATGAACCATCTTCAGGGGTTCAAAATTACGAAAGATAACCAGATGCTTATCTCGT
ATGCGAAGAAGTAAATGTACTATTGACTTGCTCGATGAATGTTGTAGTCCCAAGTTTTCGCATAATCCATAGATTTTCAT
TGTTAGGTAGACTACACCATGACAACCATGTTAATGTACTACTGCTCAGCTGCCCGTGTGTGTTTCAGGAATGAGATGAA
ATTTGAACCATCTTTGCAGTCGTGAGTTCTCCTAGTTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis