Browse Element(s) Details


Os.11275.1.S1_at

Description gb:AK070869.1
DB_XREF= gi:32980892
TID=Os.11275.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11275 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023070E07, full insert sequence.
FL= gb:AK070869.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0629011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06270Os.8381.1.S1_at11/115+3167813..3173736VIP2 protein, putative, expressed
LOC_Os05g06280Os.8608.2.S1_x_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280OsAffx.26757.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.8608.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.9766.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.8608.1.S1_a_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06290Os.11275.1.S1_at11/115+3192180..3194361expressed protein
LOC_Os05g06300Os.32913.1.S1_at11/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06300Os.54503.1.A1_at5/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06300Os.54371.1.S1_x_at1/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06310Os.12160.1.S1_at11/115+3208318..321093960S ribosomal protein L18, putative, expressed
LOC_Os05g06320Os.7454.1.S1_a_at11/115+3211013..3215401Ethylene receptor, putative, expressed
LOC_Os05g06330Os.7818.1.S1_at11/115+3219317..3223219HIRA-interacting protein 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11275.1.S1_at--841--8991Chr05:3192678..3192702 (25 bp)
TGAAGACCAAGTCCGAGCTCATCGA
LOC_Os05g06290
Os.11275.1.S1_at--219--2791Chr05:3192578..3192602 (25 bp)
AAGAGTGTGACACCACTGTCTTCCA
LOC_Os05g06290
Os.11275.1.S1_at--242--8731Chr05:3192562..3192586 (25 bp)
TGTCTTCCATGAAATGTCCCAGGCT
LOC_Os05g06290
Os.11275.1.S1_at--1131--8831Chr05:3192529..3192553 (25 bp)
TGATCAACCTGAGTAGCCCAGTGCT
LOC_Os05g06290
Os.11275.1.S1_at--299--7971Chr05:3192439..3192463 (25 bp)
GGATCTGACCAGTTTGCCGAAGACG
LOC_Os05g06290
Os.11275.1.S1_at--954--9151Chr05:3192407..3192431 (25 bp)
TGCGCTGTATTAATGTTCGTTGCTA
LOC_Os05g06290
Os.11275.1.S1_at--463--6711Chr05:3192393..3192417 (25 bp)
GTTCGTTGCTATGTTCGGTTTATCA
LOC_Os05g06290
Os.11275.1.S1_at--1073--9391Chr05:3192356..3192380 (25 bp)
TCGTAGTTTCTCGTGTGCTCTCCAT
LOC_Os05g06290
Os.11275.1.S1_at--390--3551Chr05:3192334..3192358 (25 bp)
CATCTCATCGTGTTAGGCATGCCTA
LOC_Os05g06290
Os.11275.1.S1_at--400--5951Chr05:3192284..3192308 (25 bp)
GAGCAACATCTTTTTCCCGATTATA
LOC_Os05g06290
Os.11275.1.S1_at--443--8511Chr05:3192232..3192256 (25 bp)
TGGAATTGTCTAATTGCCTCACTTG
LOC_Os05g06290
Target Sequence 
TGAAGACCAAGTCCGAGCTCATCGACAAACATAAGNAAGCTCATCGAAGGGTGGCAGAAAGAGCTGAAGGACCAGCTGGG
AAAGCATGTTANCTGNAACTCGAAAGAGTGTGACACCACTGTCTTCCATGAAATGTCCCAGGCTCCTTCCGATGATCAAC
CTGAGTAGCCCAGTGCTGGGCTATGCCTTGGAGATTTTGAGTACGCCAGCCAGGAAAAAAAAAACACCACAACAATGTTT
TAGGATCTGACCAGTTTGCCGAAGACGAACAAATTGCGCTGTATTAATGTTCGTTGCTATGTTCGGTTTATCATAATATT
ATTGTTCGTAGTTTCTCGTGTGCTCTCCATCTCATCGTGTTAGGCATGCCTAACATGTTAAACTTTTAGATTTTTCGGAG
CAACATCTTTTTCCCGATTATAGGAGTGTATGATAACATGTGTGTTCAATGGAATTGTCTAATTGCCTCACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis