Browse Element(s) Details


Os.7818.1.S1_at

Description gb:AK069217.1
DB_XREF= gi:32979241
TID=Os.7818.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010L13, full insert sequence.
FL= gb:AK069217.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0633011/11HIRA-interacting protein 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06290Os.11275.1.S1_at11/115+3192180..3194361expressed protein
LOC_Os05g06300Os.32913.1.S1_at11/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06300Os.54503.1.A1_at5/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06300Os.54371.1.S1_x_at1/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06310Os.12160.1.S1_at11/115+3208318..321093960S ribosomal protein L18, putative, expressed
LOC_Os05g06320Os.7454.1.S1_a_at11/115+3211013..3215401Ethylene receptor, putative, expressed
LOC_Os05g06330Os.7818.1.S1_at11/115+3219317..3223219HIRA-interacting protein 5, putative, expressed
LOC_Os05g06340Os.7834.1.S1_at11/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06340OsAffx.22626.1.S1_s_at11/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06340Os.32947.2.S1_at1/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06350Os.4378.2.S2_a_at11/115+3229100..3234052Importin alpha-1b subunit, putative, expressed
LOC_Os05g06360Os.46003.1.A1_x_at11/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06360Os.5541.1.A1_at11/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06360Os.46003.1.A1_at10/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06370OsAffx.26758.1.S1_x_at11/115+3241334..3242071hypothetical protein
LOC_Os05g06370OsAffx.23206.1.S1_x_at2/115+3241334..3242071hypothetical protein
LOC_Os05g06380OsAffx.26759.1.S1_x_at11/115+3247232..3248632Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009658biological_processchloroplast organization and biogenesis
GO:0016226biological_processiron-sulfur cluster assembly
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7818.1.S1_at--656--9611Chr05:3222468..3222489 (22 bp)
TCATGCATTATGTCCCTGAGGTGAA
LOC_Os05g06330
Os.7818.1.S1_at--1109--1871Chr05:3222709..3222733 (25 bp)
ACGAGGAAGCTGAACTGACTGGCCA
LOC_Os05g06330
Os.7818.1.S1_at--588--5031Chr05:3222738..3222762 (25 bp)
GAATGACTTTTCTTTACGGCCAAAT
LOC_Os05g06330
Os.7818.1.S1_at--570--8451Chr05:3222755..3222779 (25 bp)
GGCCAAATCTCAACATCTTCACATG
LOC_Os05g06330
Os.7818.1.S1_at--453--2531Chr05:3222788..3222812 (25 bp)
AACTTTGCATCGTTGTTTGTGAAAA
LOC_Os05g06330
Os.7818.1.S1_at--239--1731Chr05:3222827..3222851 (25 bp)
ACCATAGTCACTTTCTTTGTTTTGA
LOC_Os05g06330
Os.7818.1.S1_at--391--8131Chr05:3222857..3222881 (25 bp)
GGACTAGTTCAAAGTTTTCACCACG
LOC_Os05g06330
Os.7818.1.S1_at--809--5031Chr05:3222951..3222975 (25 bp)
GCAGCGTTAACTAGCCTACACAAAT
LOC_Os05g06330
Os.7818.1.S1_at--821--3731Chr05:3223032..3223056 (25 bp)
CTAATCCTTGTATATGCCGAGCCTT
LOC_Os05g06330
Os.7818.1.S1_at--484--4511Chr05:3223047..3223071 (25 bp)
GCCGAGCCTTTCTTATCTAAGCAGA
LOC_Os05g06330
Os.7818.1.S1_at--764--6851Chr05:3223119..3223143 (25 bp)
GTTTGCTTATATCTTCCTACTTCAT
LOC_Os05g06330
Target Sequence 
TCATGCATTATGTCCCTGAGGTGAAAGGAGTAGAGCAAGAACTTGATGGTGACGAGGAAGCTGAACTGACTGGCCAGTTG
GAATGACTTTTCTTTACGGCCAAATCTCAACATCTTCACATGTCGAGGGAAACTTTGCATCGTTGTTTGTGAAAATCAAT
CCTTCAAAAACCATAGTCACTTTCTTTGTTTTGAGATCAGGACTAGTTCAAAGTTTTCACCACGAATAGAGAGCTGTAAT
TTTGAACCTGATGTATGCAANAGCGAAGAAGCATACTTTCATAGATTGTAGAGGCAGCGTTAACTAGCCTACACAAATAT
CAGTTGCANTAGGGCTTAAATAAAGTGATACAGTGAGTTGATCACTGCTTTTNTCTAATCCTTGTATATGCCGAGCCTTT
CTTATCTAAGCAGAGCTGATCAGTGATTACTACAGCNTAATGAGTGTAATTCATGGTGGTGGTTTGCTTATATCTTCCTA
CTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7818.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis