Browse Element(s) Details


Os.7834.1.S1_at

Description gb:CB632770
DB_XREF= gi:29627759
DB_XREF=OSIIEb11D17.r
CLONE=OSIIEb11D17
TID=Os.7834.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=5
UG=Os.7834 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_188312.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0634011/11GATA zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06300Os.32913.1.S1_at11/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06300Os.54503.1.A1_at5/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06300Os.54371.1.S1_x_at1/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06310Os.12160.1.S1_at11/115+3208318..321093960S ribosomal protein L18, putative, expressed
LOC_Os05g06320Os.7454.1.S1_a_at11/115+3211013..3215401Ethylene receptor, putative, expressed
LOC_Os05g06330Os.7818.1.S1_at11/115+3219317..3223219HIRA-interacting protein 5, putative, expressed
LOC_Os05g06340Os.7834.1.S1_at11/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06340OsAffx.22626.1.S1_s_at11/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06340Os.32947.2.S1_at1/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06350Os.4378.2.S2_a_at11/115+3229100..3234052Importin alpha-1b subunit, putative, expressed
LOC_Os05g06360Os.46003.1.A1_x_at11/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06360Os.5541.1.A1_at11/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06360Os.46003.1.A1_at10/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06370OsAffx.26758.1.S1_x_at11/115+3241334..3242071hypothetical protein
LOC_Os05g06370OsAffx.23206.1.S1_x_at2/115+3241334..3242071hypothetical protein
LOC_Os05g06380OsAffx.26759.1.S1_x_at11/115+3247232..3248632Transferase family protein, expressed
LOC_Os05g06390NANA5+3248763..3254952retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7834.1.S1_at--356--10511Chr05:3224017..3224041 (25 bp)
TTCACCCACACTACTACATGGCTAG
LOC_Os05g06340
Os.7834.1.S1_at--509--9851Chr05:3224003..3224027 (25 bp)
TACATGGCTAGCTAAGAACCTCACA
LOC_Os05g06340
Os.7834.1.S1_at--464--2751Chr05:3223990..3224014 (25 bp)
AAGAACCTCACACCATTGATGCACA
LOC_Os05g06340
Os.7834.1.S1_at--126--1711Chr05:3223907..3223931 (25 bp)
AGCCAATCAGATGACTGTCTTAGAT
LOC_Os05g06340
Os.7834.1.S1_at--281--5351Chr05:3223852..3223876 (25 bp)
GAAGAGGCCATTTTCAGGGTGATGT
LOC_Os05g06340
Os.7834.1.S1_at--1040--6511Chr05:3223808..3223832 (25 bp)
GATTTGGTTCTTGGATCCATCCTGC
LOC_Os05g06340
Os.7834.1.S1_at--897--9171Chr05:3223786..3223810 (25 bp)
TGCCTTTTGTGCAACCTTAGATCTC
LOC_Os05g06340
Os.7834.1.S1_at--675--9791Chr05:3223687..3223711 (25 bp)
TAAGAAGCTGGTCCCTGTCCAGTTG
LOC_Os05g06340
Os.7834.1.S1_at--437--4351Chr05:3223669..3223693 (25 bp)
CCAGTTGTCCTGTCTATTGTTGATC
LOC_Os05g06340
Os.7834.1.S1_at--282--1031Chr05:3223618..3223642 (25 bp)
AGGTCATTTTACACCTCTCATATCC
LOC_Os05g06340
Os.7834.1.S1_at--272--1691Chr05:3223503..3223527 (25 bp)
AGCCTTCTTGACTTCATGTGTGCAA
LOC_Os05g06340
Target Sequence 
TTCACCCACACTACTACATGGCTAGCTAAGAACCTCACACCATTGATGCACAATTGTACATACAGTGATACAACACAAAC
ACACAAAACACAGACCACCCAATGGTTCCAAGCCAATCAGATGACTGTCTTAGATTATCATCAGGATGAGATGAGATAGG
AGGGGGAAGAGGCCATTTTCAGGGTGATGTTGATGTCAAGGGGGGACTGGATTTGGTTCTTGGATCCATCCTGCCTTTTG
TGCAACCTTAGATCTCTGAAATCGTCATATCGCGATCCGAATCCGATTGCGAAGGCGCGATGGAGGGAAATTGTGTGCCC
TTGAAGAGGGTAAGAAGCTGGTCCCTGTCCAGTTGTCCTGTCTATTGTTGATCATGGAAGGCNCCTTGTAATTAGTTAGA
GGTCATTTTACACCTCTCATATCCCCTTTTTCTGTTCATGTCTTTTGTTTTTATGTGTTTTGAATGATGATGTTCTTTTC
AACTTGAGAAGGATGGTGACCAAAAGAAGACACCAGCCTTCTTGACTTCATGTGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7834.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis