Browse Element(s) Details


OsAffx.22626.1.S1_s_at

Description gb:NM_185274.1
DB_XREF= gi:34897633
TID=OsAffx.22626.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0634011/11GATA zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06300Os.32913.1.S1_at11/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06300Os.54503.1.A1_at5/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06300Os.54371.1.S1_x_at1/115+3198034..3206141Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a, putative, expressed
LOC_Os05g06310Os.12160.1.S1_at11/115+3208318..321093960S ribosomal protein L18, putative, expressed
LOC_Os05g06320Os.7454.1.S1_a_at11/115+3211013..3215401Ethylene receptor, putative, expressed
LOC_Os05g06330Os.7818.1.S1_at11/115+3219317..3223219HIRA-interacting protein 5, putative, expressed
LOC_Os05g06340Os.7834.1.S1_at11/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06340OsAffx.22626.1.S1_s_at11/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06340Os.32947.2.S1_at1/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06350Os.4378.2.S2_a_at11/115+3229100..3234052Importin alpha-1b subunit, putative, expressed
LOC_Os05g06360Os.46003.1.A1_x_at11/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06360Os.5541.1.A1_at11/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06360Os.46003.1.A1_at10/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06370OsAffx.26758.1.S1_x_at11/115+3241334..3242071hypothetical protein
LOC_Os05g06370OsAffx.23206.1.S1_x_at2/115+3241334..3242071hypothetical protein
LOC_Os05g06380OsAffx.26759.1.S1_x_at11/115+3247232..3248632Transferase family protein, expressed
LOC_Os05g06390NANA5+3248763..3254952retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22626.1.S1_s_at--959--7271Chr05:3223449..3223727 (25 bp)
GTGCCCTTGAAGAGGTTAGTGCAAC
LOC_Os05g06340
OsAffx.22626.1.S1_s_at--35--7891Chr05:3223436..3223459 (24 bp)
GGTTAGTGCAACAAGTAGATTTTCT
LOC_Os05g06340
OsAffx.22626.1.S1_s_at--419--6531Chr05:3223419..3223443 (25 bp)
GATTTTCTACTATCATCTACTGGGA
LOC_Os05g06340
OsAffx.22626.1.S1_s_at--282--3631Chr05:3223403..3223427 (25 bp)
CTACTGGGATTACAGAAAGCTGCCA
LOC_Os05g06340
OsAffx.22626.1.S1_s_at--8--4751Chr05:3223371..3223395 (25 bp)
GCTGTTTCTTGTGCCAATCAGATGG
LOC_Os05g06340
OsAffx.22626.1.S1_s_at--1046--3371Chr05:3223353..3223377 (25 bp)
CAGATGGGATTACAGAAAGCTGCCA
LOC_Os05g06340
OsAffx.22626.1.S1_s_at--942--1591Chr05:3223336..3223360 (25 bp)
AGCTGCCAATGTGTTGCTGTTTCTT
LOC_Os05g06340
OsAffx.22626.1.S1_s_at--143--2991Chr05:3223329..3223353 (25 bp)
AATGTGTTGCTGTTTCTTGTGCCAA
LOC_Os05g06340
OsAffx.22626.1.S1_s_at--947--10551Chr05:3223316..3223340 (25 bp)
TTCTTGTGCCAATCAGAGTTCTGAC
LOC_Os05g06340
OsAffx.22626.1.S1_s_at--1017--2391Chr05:3223285..3223309 (25 bp)
AAACAACAGCTGTGACATTTTGCAT
LOC_Os05g06340
OsAffx.22626.1.S1_s_at--937--1611Chr05:3223278..3223302 (25 bp)
AGCTGTGACATTTTGCATATCATCA
LOC_Os05g06340
Target Sequence 
GTGCCCTTGAAGAGGTTAGTGCAACAAGTAGATTTTCTACTATCATCTACTGGGATTACAGAAAGCTGCCAATGTGTTGC
TGTTTCTTGTGCCAATCAGATGGGATTACAGAAAGCTGCCAATGTGTTGCTGTTTCTTGTGCCAATCAGAGTTCTGACAA
TGGAAAACAACAGCTGTGACATTTTGCATATCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22626.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis