Browse Element(s) Details


OsAffx.26759.1.S1_x_at

Description tigr:9633.m00559
TID=OsAffx.26759.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypersensitivity-related (hsr) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0638011/11Transferase family protein, expressed
LOC_Os05g049301/11Transferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06330Os.7818.1.S1_at11/115+3219317..3223219HIRA-interacting protein 5, putative, expressed
LOC_Os05g06340Os.7834.1.S1_at11/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06340OsAffx.22626.1.S1_s_at11/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06340Os.32947.2.S1_at1/115+3223222..3225521GATA zinc finger family protein, expressed
LOC_Os05g06350Os.4378.2.S2_a_at11/115+3229100..3234052Importin alpha-1b subunit, putative, expressed
LOC_Os05g06360Os.46003.1.A1_x_at11/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06360Os.5541.1.A1_at11/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06360Os.46003.1.A1_at10/115+3235590..3240846D8Ertd354e protein, putative, expressed
LOC_Os05g06370OsAffx.26758.1.S1_x_at11/115+3241334..3242071hypothetical protein
LOC_Os05g06370OsAffx.23206.1.S1_x_at2/115+3241334..3242071hypothetical protein
LOC_Os05g06380OsAffx.26759.1.S1_x_at11/115+3247232..3248632Transferase family protein, expressed
LOC_Os05g06390NANA5+3248763..3254952retrotransposon protein, putative, unclassified
LOC_Os05g06400Os.10626.4.A1_s_at11/115+3261886..3262317hypothetical protein
LOC_Os05g06400Os.40531.1.A1_x_at3/115+3261886..3262317hypothetical protein
LOC_Os05g06410OsAffx.14571.1.S1_at11/115+3267244..3267801hypothetical protein
LOC_Os05g06420Os.21445.1.S1_at11/115+3269046..3271988EARLY FLOWERING 3, putative, expressed
LOC_Os05g06430Os.5618.1.S1_at11/115+3272719..3276071protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os05g06430Os.39053.1.A1_s_at11/115+3272719..3276071protein disulfide-isomerase A6 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26759.1.S1_x_at--980--9611Chr05:3248043..3248067 (25 bp)
TCATCGCCGCCTTCACGTGGCGGTG
LOC_Os05g06380
OsAffx.26759.1.S1_x_at--813--10491Chr05:3248054..3248078 (25 bp)
TTCACGTGGCGGTGCCGCGCCAACG
LOC_Os05g06380
OsAffx.26759.1.S1_x_at--128--3971Chr05:3248103..3248127 (25 bp)
CGGTGCGCGTCCAGTTCGTCGTGAA
LOC_Os05g06380
OsAffx.26759.1.S1_x_at--1090--9152Chr05:3248106..3248130 (25 bp)
TGCGCGTCCAGTTCGTCGTGAACGC
LOC_Os05g06380
OsAffx.26759.1.S1_x_at--639--8272Chr05:3248183..3248207 (25 bp)
GGCTACTACGGCAACGCGTTCGCGT
LOC_Os05g06380
OsAffx.26759.1.S1_x_at--1011--9291Chr05:3248265..3248289 (25 bp)
TCCGCCTCGTGGTGGACGCCAAGGC
LOC_Os05g06380
OsAffx.26759.1.S1_x_at--262--10651Chr05:3248357..3248381 (25 bp)
TTCGCCGTGGCACGCACCTACGTGG
LOC_Os05g06380
OsAffx.26759.1.S1_x_at--457--8511Chr05:3248364..3248388 (25 bp)
TGGCACGCACCTACGTGGTGTCGGA
LOC_Os05g06380
OsAffx.26759.1.S1_x_at--710--1911Chr05:3248376..3248400 (25 bp)
ACGTGGTGTCGGACCTCACGCGGTC
LOC_Os05g06380
OsAffx.26759.1.S1_x_at--487--4611Chr05:3248459..3248483 (25 bp)
GCGACGCTGGCGACGTTCCACGTCG
LOC_Os05g06380
OsAffx.26759.1.S1_x_at--319--1091Chr05:3248511..3248535 (25 bp)
AGGGCGTCGAGGTGCCTATTCGGCT
LOC_Os05g06380
Target Sequence 
TCATCGCCGCCTTCACGTGGCGGTGCCGCGCCAACGCGCTCCAATACGACGCCGCCGACGCGGTGCGCGTCCAGTTCGTC
GTGAACGCCCGCGGCGGCGGCCGCGGGCGCCGCAGCAACGCCCCGCCGCTTCTCCCCGACGGCTACTACGGCAACGCGTT
CGCGTTCGCCGTCGCCGAGTCGCCGGCGGGGGAGCTCCGCCGGCGCCCGTTCGCGCACGCGCTCCGCCTCGTGGTGGACG
CCAAGGCGCGCGCCATGGAGGAGGGCCACCTCCAGTCGGTGGCCGACCTGATGGCGGCGCGCGGGCGGCCGCGGTTCGCC
GTGGCACGCACCTACGTGGTGTCGGACCTCACGCGGTCGGGGCTCGACGGCGTGGACGTCGGGTGGGGCGCGCCGGCGTA
CGGCGGGCCGGCGACGGCGACGCTGGCGACGTTCCACGTCGCCGGGAGGAGGAGCGGGGACGGCGAGGAGGGCGTCGAGG
TGCCTATTCGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26759.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis