Browse Element(s) Details


Os.39053.1.A1_s_at

Description gb:BU673795
DB_XREF= gi:23514767
DB_XREF=NL_20_41
CLONE=NL_20_41
TID=Os.39053.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39053 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0643011/11protein disulfide-isomerase A6 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06380OsAffx.26759.1.S1_x_at11/115+3247232..3248632Transferase family protein, expressed
LOC_Os05g06390NANA5+3248763..3254952retrotransposon protein, putative, unclassified
LOC_Os05g06400Os.10626.4.A1_s_at11/115+3261886..3262317hypothetical protein
LOC_Os05g06400Os.40531.1.A1_x_at3/115+3261886..3262317hypothetical protein
LOC_Os05g06410OsAffx.14571.1.S1_at11/115+3267244..3267801hypothetical protein
LOC_Os05g06420Os.21445.1.S1_at11/115+3269046..3271988EARLY FLOWERING 3, putative, expressed
LOC_Os05g06430Os.5618.1.S1_at11/115+3272719..3276071protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os05g06430Os.39053.1.A1_s_at11/115+3272719..3276071protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os05g06440Os.5064.1.S1_at11/115+3281224..3285723DnaJ domain containing protein, expressed
LOC_Os05g06450Os.2349.1.S1_at11/115+3285954..3290634Tubulin gamma-2 chain, putative, expressed
LOC_Os05g06460Os.24899.1.A1_at11/115+3291409..3297735Dihydrolipoyl dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39053.1.A1_s_at--353--5511Chr05:3272991..3273015 (25 bp)
GAAAAGGCAATATCGATATCAGCAA
LOC_Os05g06430
Os.39053.1.A1_s_at--421--10151Chr05:3272981..3273005 (25 bp)
TATCGATATCAGCAAGAGATGGCAA
LOC_Os05g06430
Os.39053.1.A1_s_at--1078--6011Chr05:3272966..3272990 (25 bp)
GAGATGGCAATGGAAGTTCGTTAGT
LOC_Os05g06430
Os.39053.1.A1_s_at--424--1231Chr05:3272952..3272976 (25 bp)
AGTTCGTTAGTTGGGTATTCTGTTG
LOC_Os05g06430
Os.39053.1.A1_s_at--1001--531Chr05:3272944..3272968 (25 bp)
AGTTGGGTATTCTGTTGAACAAACA
LOC_Os05g06430
Os.39053.1.A1_s_at--358--111Chr05:3272936..3272960 (25 bp)
ATTCTGTTGAACAAACATGTATCCC
LOC_Os05g06430
Os.39053.1.A1_s_at--611--10591Chr05:3272883..3272907 (25 bp)
TTCTGCTATTTGCTTTTGTGGTTAC
LOC_Os05g06430
Os.39053.1.A1_s_at--695--4891Chr05:3272872..3272896 (25 bp)
GCTTTTGTGGTTACAGGGATTGACA
LOC_Os05g06430
Os.39053.1.A1_s_at--564--3051Chr05:3272843..3272867 (25 bp)
AATCAGCTAGTTTACTCAAGAACAC
LOC_Os05g06430
Os.39053.1.A1_s_at--465--1051Chr05:3272817..3272841 (25 bp)
AGAGGTTTTGTAACCATCCCGTGAT
LOC_Os05g06430
Os.39053.1.A1_s_at--10--10411Chr05:3272812..3272836 (25 bp)
TTTTGTAACCATCCCGTGATGAGTG
LOC_Os05g06430
Target Sequence 
GAAAAGGCAATATCGATATCAGCAAGAGATGGCAATGGAAGTTCGTTAGTTGGGTATTCTGTTGAACAAACATGTATCCC
NCTGCCCGGCATGATCTTTTTTTTTTCTTTCTGCTATTTGCTTTTGTGGTTACAGGGATTGACATANCAATCAGCTAGTT
TACTCAAGAACACAAGAGGTTTTGTAACCATCCCGTGATGAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39053.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis