Browse Element(s) Details


OsAffx.14571.1.S1_at

Description tigr:9633.m00562
TID=OsAffx.14571.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0641011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06380OsAffx.26759.1.S1_x_at11/115+3247232..3248632Transferase family protein, expressed
LOC_Os05g06390NANA5+3248763..3254952retrotransposon protein, putative, unclassified
LOC_Os05g06400Os.10626.4.A1_s_at11/115+3261886..3262317hypothetical protein
LOC_Os05g06400Os.40531.1.A1_x_at3/115+3261886..3262317hypothetical protein
LOC_Os05g06410OsAffx.14571.1.S1_at11/115+3267244..3267801hypothetical protein
LOC_Os05g06420Os.21445.1.S1_at11/115+3269046..3271988EARLY FLOWERING 3, putative, expressed
LOC_Os05g06430Os.5618.1.S1_at11/115+3272719..3276071protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os05g06430Os.39053.1.A1_s_at11/115+3272719..3276071protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os05g06440Os.5064.1.S1_at11/115+3281224..3285723DnaJ domain containing protein, expressed
LOC_Os05g06450Os.2349.1.S1_at11/115+3285954..3290634Tubulin gamma-2 chain, putative, expressed
LOC_Os05g06460Os.24899.1.A1_at11/115+3291409..3297735Dihydrolipoyl dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14571.1.S1_at--586--6671Chr05:3267493..3267517 (25 bp)
GTTGCTCTGGCCAGCGCAAGGCAGT
LOC_Os05g06410
OsAffx.14571.1.S1_at--972--8471Chr05:3267517..3267541 (25 bp)
TGGCGGTGGTGCGAGCAGGTCGCTA
LOC_Os05g06410
OsAffx.14571.1.S1_at--151--7791Chr05:3267524..3267548 (25 bp)
GGTGCGAGCAGGTCGCTAGCGCCGA
LOC_Os05g06410
OsAffx.14571.1.S1_at--426--4231Chr05:3267545..3267569 (25 bp)
CCGACGTGGTGACGGCTGCGACCGA
LOC_Os05g06410
OsAffx.14571.1.S1_at--867--971Chr05:3267592..3267616 (25 bp)
AGGAGGGCACGCACCAAGGAACTCG
LOC_Os05g06410
OsAffx.14571.1.S1_at--253--1091Chr05:3267628..3267652 (25 bp)
AGGGCGACGACTGTCATGTGGATCC
LOC_Os05g06410
OsAffx.14571.1.S1_at--472--4611Chr05:3267631..3267655 (25 bp)
GCGACGACTGTCATGTGGATCCAGG
LOC_Os05g06410
OsAffx.14571.1.S1_at--1062--1851Chr05:3267634..3267658 (25 bp)
ACGACTGTCATGTGGATCCAGGGCG
LOC_Os05g06410
OsAffx.14571.1.S1_at--869--3951Chr05:3267666..3267690 (25 bp)
CGGAGCTACGCCAGTCGGAATTGGT
LOC_Os05g06410
OsAffx.14571.1.S1_at--85--5911Chr05:3267668..3267692 (25 bp)
GAGCTACGCCAGTCGGAATTGGTGT
LOC_Os05g06410
OsAffx.14571.1.S1_at--140--3731Chr05:3267671..3267695 (25 bp)
CTACGCCAGTCGGAATTGGTGTGGT
LOC_Os05g06410
Target Sequence 
GTTGCTCTGGCCAGCGCAAGGCAGTGGCGGTGGTGCGAGCAGGTCGCTAGCGCCGACGTGGTGACGGCTGCGACCGAGCT
GATGGACGGTGGCACAATGAGGAGGGCACGCACCAAGGAACTCGCCGTGAGGGCGAGGGCGACGACTGTCATGTGGATCC
AGGGCGGCATCGCCGGAGCTACGCCAGTCGGAATTGGTGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14571.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis