Browse Element(s) Details


Os.2349.1.S1_at

Description gb:AK102557.1
DB_XREF= gi:32987766
TID=Os.2349.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2349 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) gamma-tubulin (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033097H10, full insert sequence.
FL= gb:AK102557.1 gb:AF036957.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0645011/11Tubulin gamma-2 chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06400Os.10626.4.A1_s_at11/115+3261886..3262317hypothetical protein
LOC_Os05g06400Os.40531.1.A1_x_at3/115+3261886..3262317hypothetical protein
LOC_Os05g06410OsAffx.14571.1.S1_at11/115+3267244..3267801hypothetical protein
LOC_Os05g06420Os.21445.1.S1_at11/115+3269046..3271988EARLY FLOWERING 3, putative, expressed
LOC_Os05g06430Os.5618.1.S1_at11/115+3272719..3276071protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os05g06430Os.39053.1.A1_s_at11/115+3272719..3276071protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os05g06440Os.5064.1.S1_at11/115+3281224..3285723DnaJ domain containing protein, expressed
LOC_Os05g06450Os.2349.1.S1_at11/115+3285954..3290634Tubulin gamma-2 chain, putative, expressed
LOC_Os05g06460Os.24899.1.A1_at11/115+3291409..3297735Dihydrolipoyl dehydrogenase, putative, expressed
LOC_Os05g06470Os.44893.2.S1_x_at9/115+3301300..3312031expressed protein
LOC_Os05g06470Os.44893.2.S1_at6/115+3301300..3312031expressed protein
LOC_Os05g06480Os.49722.2.S1_at10/115+3313397..3317834Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os05g06480Os.49722.2.S1_x_at10/115+3313397..3317834Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0045298cellular_componenttubulin
GO:0005198molecular_functionstructural molecule activity
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2349.1.S1_at--782--2931Chr05:3286964..3286988 (25 bp)
AAGGCTTGCGAATCACCAGACTACA
LOC_Os05g06450
Os.2349.1.S1_at--854--9131Chr05:3286828..3286852 (25 bp)
TGCGGCCGCACTTGATTCGAAGTTA
LOC_Os05g06450
Os.2349.1.S1_at--505--2531Chr05:3286336..3286360 (25 bp)
AACTCTAATTGCCTGATGGTCATCA
LOC_Os05g06450
Os.2349.1.S1_at--169--2011Chr05:3286282..3286306 (25 bp)
ACTCTAGTGCTAGATGCGTTTCCTC
LOC_Os05g06450
Os.2349.1.S1_at--345--6851Chr05:3286265..3286289 (25 bp)
GTTTCCTCAGCATTCTTCAAGTTTG
LOC_Os05g06450
Os.2349.1.S1_at--89--9731Chr05:3286249..3286273 (25 bp)
TCAAGTTTGCTTCTCGTGTTAGTGT
LOC_Os05g06450
Os.2349.1.S1_at--204--6791Chr05:3286232..3286256 (25 bp)
GTTAGTGTTACAGCCTGTGCGACAT
LOC_Os05g06450
Os.2349.1.S1_at--140--8771Chr05:3286204..3286228 (25 bp)
TGTATATCTTGACCCACTTCGAACT
LOC_Os05g06450
Os.2349.1.S1_at--156--2571Chr05:3286183..3286207 (25 bp)
AACTGGCCGTAGTTTGTGCTGTTCC
LOC_Os05g06450
Os.2349.1.S1_at--396--9091Chr05:3286167..3286191 (25 bp)
TGCTGTTCCGTTTTGGGTTGCAATC
LOC_Os05g06450
Os.2349.1.S1_at--564--9011Chr05:3286149..3286173 (25 bp)
TGCAATCCCTTCTGGGATGCTTTGT
LOC_Os05g06450
Target Sequence 
AAGGCTTGCGAATCACCAGACTACATCAAATGGGGGATGGAGGATGCTGGAGAGGCAAACGTTGCGGCCGCACTTGATTC
GAAGTTAGTGGTGTAAATATGAAGGTCCTACAAGAATGCAACTCTAATTGCCTGATGGTCATCAGTTCGATGGCAGCTGC
TCGACTCGTTCCCACTCTAGTGCTAGATGCGTTTCCTCAGCATTCTTCAAGTTTGCTTCTCGTGTTAGTGTTACAGCCTG
TGCGACATGAGTGTATATCTTGACCCACTTCGAACTGGCCGTAGTTTGTGCTGTTCCGTTTTGGGTTGCAATCCCTTCTG
GGATGCTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis