Browse Element(s) Details

Os.49722.2.S1_x_at

Description

gb:AK107275.1
DB_XREF= gi:32992484
TID=Os.49722.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49722 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-A04, full insert sequence.
FL= gb:AK107275.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os05g06480	10/11	Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os05g06450	Os.2349.1.S1_at	11/11	5	+	3285954..3290634	Tubulin gamma-2 chain, putative, expressed
LOC_Os05g06460	Os.24899.1.A1_at	11/11	5	+	3291409..3297735	Dihydrolipoyl dehydrogenase, putative, expressed
LOC_Os05g06470	Os.44893.2.S1_x_at	9/11	5	+	3301300..3312031	expressed protein
LOC_Os05g06470	Os.44893.2.S1_at	6/11	5	+	3301300..3312031	expressed protein
LOC_Os05g06480	Os.49722.2.S1_at	10/11	5	+	3313397..3317834	Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os05g06480	Os.49722.2.S1_x_at	10/11	5	+	3313397..3317834	Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os05g06490	Os.9469.1.S1_at	11/11	5	+	3320083..3322613	RNA polymerase Rpb7, N-terminal domain containing protein, expressed
LOC_Os05g06500	Os.10691.1.S1_at	10/11	5	+	3323165..3325263	universal stress protein family protein, expressed
LOC_Os05g06510	Os.37384.1.S1_s_at	11/11	5	+	3326831..3330863	4Fe-4S binding domain containing protein, expressed
LOC_Os05g06510	Os.19268.1.S1_at	11/11	5	+	3326831..3330863	4Fe-4S binding domain containing protein, expressed
LOC_Os05g06510	Os.37384.1.S1_x_at	10/11	5	+	3326831..3330863	4Fe-4S binding domain containing protein, expressed
LOC_Os05g06520	NA	NA	5	+	3333562..3333816	Helix-loop-helix DNA-binding domain containing protein
LOC_Os05g06530	Os.24178.1.A1_at	10/11	5	+	3339204..3342505	expressed protein
LOC_Os05g06530	Os.24178.1.A1_x_at	9/11	5	+	3339204..3342505	expressed protein
LOC_Os05g06530	Os.11641.1.S1_at	7/11	5	+	3339204..3342505	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0009926	biological_process	auxin polar transport
GO:0010248	biological_process	establishment and/or maintenance of transmembrane electrochemical gradient
GO:0005739	cellular_component	mitochondrion
GO:0005794	cellular_component	Golgi apparatus
GO:0005886	cellular_component	plasma membrane
GO:0009705	cellular_component	vacuolar membrane (sensu Magnoliophyta)
GO:0010008	cellular_component	endosome membrane
GO:0009678	molecular_function	hydrogen-translocating pyrophosphatase activity
GO:0016887	molecular_function	ATPase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.49722.2.S1_x_at--1067--345	1	Chr05:3313895..3313919 (25 bp)	CAGGTGGCGATCTCGGCGTCGAACA	LOC_Os05g06480
Os.49722.2.S1_x_at--264--749	1	Chr05:3313860..3313884 (25 bp)	GTGGGACAACGCCAAGAAGTACATC	LOC_Os05g06480
Os.49722.2.S1_x_at--883--839	1	Chr05:3313801..3313825 (25 bp)	GGCCCAAGGGCTCCGAGGCGCACAA	LOC_Os05g06480
Os.49722.2.S1_x_at--202--501	1	Chr05:3313656..3313680 (25 bp)	GCATGGCGGCATCGTCTTCAACCAC	LOC_Os05g06480
Os.49722.2.S1_x_at--567--71	1	Chr05:3313575..3313599 (25 bp)	ATGATCGATCAGCTGCACCTGCATG	LOC_Os05g06480
Os.49722.2.S1_x_at--818--903	1	Chr05:3313562..3313586 (25 bp)	TGCACCTGCATGCACGCATGGATAA	LOC_Os05g06480
Os.49722.2.S1_x_at--235--1079	1	Chr05:3313476..3313500 (25 bp)	TTGTAGCTCGGGATAATGCAGTGTC	LOC_Os05g06480
Os.49722.2.S1_x_at--1000--975	1	Chr05:3313463..3313487 (25 bp)	TAATGCAGTGTCAGATGTAATCCAA	LOC_Os05g06480
Os.49722.2.S1_x_at--637--745	1	Chr05:3313437..3313461 (25 bp)	GTGTCTTGTTGCTTGGGATATGTAA	LOC_Os05g06480
Os.49722.2.S1_x_at--82--469	1	Chr05:3313411..3313435 (25 bp)	GCGGTTTGAGACTTAGGATGTAATC	LOC_Os05g06480
Os.49722.2.S1_x_at--752--99	1	Chr05:3313397..3313421 (25 bp)	AGGATGTAATCCAATGTTGTTTTAG	NONE

Target Sequence

CAGGTGGCGATCTCGGCGTCGAACAGCGGCGGCGCGTGGGACAACGCCAAGAAGTACATCGAGGCCGGGGCGACGGAGGA
GGCGAGGTCGCTGGGGCCCAAGGGCTCCGAGGCGCACAAGGCGGCGGTGATCGGGGACACCATCGGCGACCCGCTCAAGG
ACACCTCGGGGCCATCGCTCAACATCCTCGTCAAGCTCATGGCCGTCGAGGCGCTCGTCTTCGCCCCCTTCTTCGCCGCG
CATGGCGGCATCGTCTTCAACCACCTCTGATGAAGCTGAGCTCCATTGCTAATAAATTAAGCTGCATGCATGCTCTCGCC
ATGATCGATCAGCTGCACCTGCATGCACGCATGGATAAACAAGAAGAAGACGATGAGCATTAGGGTTCCTTAACCAGTTG
AAACCGATAAGAGTAATAATTGTAGCTCGGGATAATGCAGTGTCAGATGTAATCCAAAGTGTCTTGTTGCTTGGGATATG
TAATGCGGTTTGAGACTTAGGATGTAATCCAATGTTGTTTTAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis