Browse Element(s) Details


Os.44893.2.S1_at

Description gb:NM_185284.1
DB_XREF= gi:34897653
TID=Os.44893.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44893 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g064706/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06440Os.5064.1.S1_at11/115+3281224..3285723DnaJ domain containing protein, expressed
LOC_Os05g06450Os.2349.1.S1_at11/115+3285954..3290634Tubulin gamma-2 chain, putative, expressed
LOC_Os05g06460Os.24899.1.A1_at11/115+3291409..3297735Dihydrolipoyl dehydrogenase, putative, expressed
LOC_Os05g06470Os.44893.2.S1_x_at9/115+3301300..3312031expressed protein
LOC_Os05g06470Os.44893.2.S1_at6/115+3301300..3312031expressed protein
LOC_Os05g06480Os.49722.2.S1_at10/115+3313397..3317834Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os05g06480Os.49722.2.S1_x_at10/115+3313397..3317834Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os05g06490Os.9469.1.S1_at11/115+3320083..3322613RNA polymerase Rpb7, N-terminal domain containing protein, expressed
LOC_Os05g06500Os.10691.1.S1_at10/115+3323165..3325263universal stress protein family protein, expressed
LOC_Os05g06510Os.37384.1.S1_s_at11/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06510Os.19268.1.S1_at11/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06510Os.37384.1.S1_x_at10/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06520NANA5+3333562..3333816Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.44893.2.S1_at--50--2631NONE
AACCTTCAAAAAATGTTCCAGCGAG
NONE
Os.44893.2.S1_at--138--1751NONE
ACCTTCAAAAAATGTTCCAGCGAGT
NONE
Os.44893.2.S1_at--978--4291NONE
CCTTCAAAAAATGTTCCAGCGAGTC
NONE
Os.44893.2.S1_at--545--3651Chr05:3302918..3302937 (20 bp)
CTTCAAAAAATGTTCCAGCGAGTCA
LOC_Os05g06470
Os.44893.2.S1_at--412--10511Chr05:3302918..3302938 (21 bp)
TTCAAAAAATGTTCCAGCGAGTCAA
LOC_Os05g06470
Os.44893.2.S1_at--215--9711Chr05:3302918..3302939 (22 bp)
TCAAAAAATGTTCCAGCGAGTCAAA
LOC_Os05g06470
Os.44893.2.S1_at--714--3271Chr05:3302918..3302940 (23 bp)
CAAAAAATGTTCCAGCGAGTCAAAG
LOC_Os05g06470
Os.44893.2.S1_at--173--2151Chr05:3302918..3302941 (24 bp)
AAAAAATGTTCCAGCGAGTCAAAGT
LOC_Os05g06470
Os.44893.2.S1_at--639--2411Chr05:3302918..3302942 (25 bp)
AAAAATGTTCCAGCGAGTCAAAGTG
LOC_Os05g06470
Target Sequence 
AACCTTCAAAAAATGTTCCAGCGAGTCAAAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.44893.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis