Browse Element(s) Details


Os.9469.1.S1_at

Description gb:AK062374.1
DB_XREF= gi:32972392
TID=Os.9469.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9469 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-102-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-A10, full insert sequence.
FL= gb:AK062374.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0649011/11RNA polymerase Rpb7, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06460Os.24899.1.A1_at11/115+3291409..3297735Dihydrolipoyl dehydrogenase, putative, expressed
LOC_Os05g06470Os.44893.2.S1_x_at9/115+3301300..3312031expressed protein
LOC_Os05g06470Os.44893.2.S1_at6/115+3301300..3312031expressed protein
LOC_Os05g06480Os.49722.2.S1_at10/115+3313397..3317834Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os05g06480Os.49722.2.S1_x_at10/115+3313397..3317834Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os05g06490Os.9469.1.S1_at11/115+3320083..3322613RNA polymerase Rpb7, N-terminal domain containing protein, expressed
LOC_Os05g06500Os.10691.1.S1_at10/115+3323165..3325263universal stress protein family protein, expressed
LOC_Os05g06510Os.37384.1.S1_s_at11/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06510Os.19268.1.S1_at11/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06510Os.37384.1.S1_x_at10/115+3326831..33308634Fe-4S binding domain containing protein, expressed
LOC_Os05g06520NANA5+3333562..3333816Helix-loop-helix DNA-binding domain containing protein
LOC_Os05g06530Os.24178.1.A1_at10/115+3339204..3342505expressed protein
LOC_Os05g06530Os.24178.1.A1_x_at9/115+3339204..3342505expressed protein
LOC_Os05g06530Os.11641.1.S1_at7/115+3339204..3342505expressed protein
LOC_Os05g06540Os.24080.1.A1_at1/115+3347106..3351035hypothetical protein
LOC_Os05g06540Os.38041.1.S1_at1/115+3347106..3351035hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9469.1.S1_at--594--1531Chr05:3322147..3322171 (25 bp)
AGCATCTTTCTGTCGGAGAAGACGA
LOC_Os05g06490
Os.9469.1.S1_at--906--1391Chr05:3322166..3322190 (25 bp)
AGACGATGAGCGACTTCAAGTACAT
LOC_Os05g06490
Os.9469.1.S1_at--63--5471Chr05:3322343..3322367 (25 bp)
GAACTGCTTCTAATGGTGGCTCTGC
LOC_Os05g06490
Os.9469.1.S1_at--328--9491Chr05:3322363..3322387 (25 bp)
TCTGCTGCACATTTTGCTACCTTGA
LOC_Os05g06490
Os.9469.1.S1_at--165--2991Chr05:3322401..3322425 (25 bp)
AATGTGTTAGCCTTAACCTGCTGTC
LOC_Os05g06490
Os.9469.1.S1_at--348--7751Chr05:3322434..3322458 (25 bp)
GGTGTCGTGATGACTGATCATACCT
LOC_Os05g06490
Os.9469.1.S1_at--526--9971Chr05:3322454..3322478 (25 bp)
TACCTGTATCGTATCTGTGATGCTG
LOC_Os05g06490
Os.9469.1.S1_at--1057--8271Chr05:3322494..3322518 (25 bp)
GGCATTAGGCCATATGTTTAGCATT
LOC_Os05g06490
Os.9469.1.S1_at--35--5211Chr05:3322531..3322555 (25 bp)
GAATTGTCATGGCTGATGAACCTCT
LOC_Os05g06490
Os.9469.1.S1_at--186--671Chr05:3322546..3322570 (25 bp)
ATGAACCTCTATTTCCTATGGCTGC
LOC_Os05g06490
Os.9469.1.S1_at--127--651Chr05:3322584..3322608 (25 bp)
ATGCATATATTTGCTGCCTTCCTTT
LOC_Os05g06490
Target Sequence 
AGCATCTTTCTGTCGGAGAAGACGATGAGCGACTTCAAGTACATTGGTGGGGAGAACGCNGGTGTTCATGAATGAACACT
CGAAGCTGGAGAAGGACACCGTCGTGCGCTTCNAAGGTCATGGGGTTCCGCTGGATGGAAGCCGATCGCCAGTTCCAGCT
CCTTGCTACCCTGGCTGGTGACTATCTTGGACCACTATGAACTGCTTCTAATGGTGGCTCTGCTGCACATTTTGCTACCT
TGATGAATGGATTTGAAATGTGTTAGCCTTAACCTGCTGTCTGTAGTTTGGTGTCGTGATGACTGATCATACCTGTATCG
TATCTGTGATGCTGGTTGTTGATGTAAATGGCATTAGGCCATATGTTTAGCATTTCAGCATGATGAGAATTGTCATGGCT
GATGAACCTCTATTTCCTATGGCTGCTCACCGTTNTACCATGCATATATTTGCTGCCTTCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis