Browse Element(s) Details


Os.38041.1.S1_at

Description gb:AK060561.1
DB_XREF= gi:32970579
TID=Os.38041.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.38041 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033031C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-022-G04, full insert sequence.
FL= gb:AK101218.1 gb:AK060561.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0663011/11expressed protein
LOC_Os05g065401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06580NANA5+3376989..3378819retrotransposon protein, putative, unclassified
LOC_Os05g06590NANA5+3382887..3385701retrotransposon protein, putative, unclassified
LOC_Os05g06600OsAffx.26762.1.S1_at11/115+3386486..3388890hypothetical protein
LOC_Os05g06600OsAffx.8723.1.S1_at2/115+3386486..3388890hypothetical protein
LOC_Os05g06600Os.54405.1.S1_at1/115+3386486..3388890hypothetical protein
LOC_Os05g06610NANA5+3389850..3394296retrotransposon protein, putative, unclassified
LOC_Os05g06620Os.7307.3.S1_x_at1/115+3398518..3400491retrotransposon protein, putative, unclassified
LOC_Os05g06630Os.38041.1.S1_at11/115+3402684..3406845expressed protein
LOC_Os05g06630Os.38041.1.S2_at10/115+3402684..3406845expressed protein
LOC_Os05g06630Os.24178.1.A1_x_at2/115+3402684..3406845expressed protein
LOC_Os05g06640NANA5+3409036..3411131retrotransposon protein, putative, unclassified
LOC_Os05g06650Os.24080.1.A1_at11/115+3412487..3416256expressed protein
LOC_Os05g06660Os.18819.1.S1_at11/115+3417229..3421788Serine carboxypeptidase II precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38041.1.S1_at--30--211Chr05:3405324..3405348 (25 bp)
ATCAATGGTGGCTTTATGGTTAAAC
LOC_Os05g06630
Os.38041.1.S1_at--274--7892Chr05:3405341..3405365 (25 bp)
GGTTAAACGCATAGCTGATGATTCT
LOC_Os05g06630
Os.38041.1.S1_at--56--10271Chr05:3405935..3405959 (25 bp)
TTTGACATGATCTTCTGTCGGGCGT
LOC_Os05g06630
Os.38041.1.S1_at--932--3511Chr05:3405940..3405964 (25 bp)
CATGATCTTCTGTCGGGCGTTTAAC
LOC_Os05g06630
Os.38041.1.S1_at--751--9831Chr05:3406010..3406034 (25 bp)
TAAACGACTGTCAGATTCAGCCCGA
LOC_Os05g06630
Os.38041.1.S1_at--617--8572Chr05:3406036..3406060 (25 bp)
TGGTCCCTTTTGAACGAAGTTTGAT
LOC_Os05g06630
Os.38041.1.S1_at--225--6852Chr05:3406054..3406078 (25 bp)
GTTTGATATTCATGTCCCCACATTG
LOC_Os05g06630
Os.38041.1.S1_at--260--772Chr05:3406065..3406089 (25 bp)
ATGTCCCCACATTGTTGCCTGTATC
LOC_Os05g06630
Os.38041.1.S1_at--918--2071Chr05:3406073..3406097 (25 bp)
ACATTGTTGCCTGTATCTCGTGCTA
LOC_Os05g06630
Os.38041.1.S1_at--771--10691Chr05:3406079..3406103 (25 bp)
TTGCCTGTATCTCGTGCTATCTATA
LOC_Os05g06630
Os.38041.1.S1_at--705--9411Chr05:3406090..3406114 (25 bp)
TCGTGCTATCTATACAATGTTGCCT
LOC_Os05g06630
Target Sequence 
ATCAATGGTGGCTTTATGGTTAAACGCATAGCTGATGATTCTGCTCTTGAGCATCTTGGTGTTAGACAGGGTGACGTGAT
CTTTTTTGAGGACGAGTGCGGGACTAATTTGCCTGAGATCGAAGATTATCTCCTATCTCTTGGTTGGAGATACCTGCAGG
GGATGAAGTCGATGGTTCTCAAGTTGCTAGTACATGACATTGAAGGTCCATGTAAGGAGACAATTNCCTTGCCCTTAGAG
TTTTCTGTCGATTCAGGAAAGGTAGCCCGATGGAGGATGGCTTGAAGATGTACAGCAAGACTGAAGTTACCTAGAGATGA
TAATTTTGTGAATGTTAGTTACTTGAATGTTCTTTGACATGATCTTCTGTCGGGCGTTTAACCTAGGACTTACCTAATTT
TGGCTGGCTGAGCTANGCTAATTAATTTAAACGACTGTCAGATTCAGCCCGATTGGTCCCTTTTGAACGAAGTTTGATAT
TCATGTCCCCACATTGTTGCCTGTATCTCGTGCTATCTATACAATGTTGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38041.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis