Browse Element(s) Details


Os.21445.1.S1_at

Description gb:AK071622.1
DB_XREF= gi:32981645
TID=Os.21445.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21445 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099E19, full insert sequence.
FL= gb:AK071622.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0642011/11EARLY FLOWERING 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06380OsAffx.26759.1.S1_x_at11/115+3247232..3248632Transferase family protein, expressed
LOC_Os05g06390NANA5+3248763..3254952retrotransposon protein, putative, unclassified
LOC_Os05g06400Os.10626.4.A1_s_at11/115+3261886..3262317hypothetical protein
LOC_Os05g06400Os.40531.1.A1_x_at3/115+3261886..3262317hypothetical protein
LOC_Os05g06410OsAffx.14571.1.S1_at11/115+3267244..3267801hypothetical protein
LOC_Os05g06420Os.21445.1.S1_at11/115+3269046..3271988EARLY FLOWERING 3, putative, expressed
LOC_Os05g06430Os.5618.1.S1_at11/115+3272719..3276071protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os05g06430Os.39053.1.A1_s_at11/115+3272719..3276071protein disulfide-isomerase A6 precursor, putative, expressed
LOC_Os05g06440Os.5064.1.S1_at11/115+3281224..3285723DnaJ domain containing protein, expressed
LOC_Os05g06450Os.2349.1.S1_at11/115+3285954..3290634Tubulin gamma-2 chain, putative, expressed
LOC_Os05g06460Os.24899.1.A1_at11/115+3291409..3297735Dihydrolipoyl dehydrogenase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21445.1.S1_at--809--9371Chr05:3271396..3271420 (25 bp)
TCTGAAAATGAAGGCCGGTTCCCAT
LOC_Os05g06420
Os.21445.1.S1_at--676--10651Chr05:3271414..3271438 (25 bp)
TTCCCATCTTCTCCAAATGACATGT
LOC_Os05g06420
Os.21445.1.S1_at--550--6131Chr05:3271488..3271512 (25 bp)
GAGGGTTCAGGGACCACATGCATAT
LOC_Os05g06420
Os.21445.1.S1_at--1145--2551Chr05:3271514..3271538 (25 bp)
AACTGTCGTTCTGTGGCAGACAAGA
LOC_Os05g06420
Os.21445.1.S1_at--151--8031Chr05:3271642..3271666 (25 bp)
GGAGTCAGTTACCAGATGCCGGAAA
LOC_Os05g06420
Os.21445.1.S1_at--497--131Chr05:3271697..3271721 (25 bp)
ATTACATTGAGGATTGCACCCCGCA
LOC_Os05g06420
Os.21445.1.S1_at--241--4131Chr05:3271718..3271742 (25 bp)
CGCATGGTTGTCTGAGTGACCTCAA
LOC_Os05g06420
Os.21445.1.S1_at--910--6011Chr05:3271803..3271827 (25 bp)
GAGAGATCACACCATATGCCATTTT
LOC_Os05g06420
Os.21445.1.S1_at--514--10771Chr05:3271882..3271906 (25 bp)
TTGATGTTCAATCCACTGTAACCCC
LOC_Os05g06420
Os.21445.1.S1_at--460--7051Chr05:3271899..3271923 (25 bp)
GTAACCCCTAGTATGAACATGTGCT
LOC_Os05g06420
Os.21445.1.S1_at--541--5491Chr05:3271913..3271937 (25 bp)
GAACATGTGCTTTTCGAGATCCTGA
LOC_Os05g06420
Target Sequence 
TCTGAAAATGAAGGCCGGTTCCCATCTTCTCCAAATGACATGTGCCNATGGAGGTGACCTGAGGAAAACAGCACTACTGA
GGTCAGTGCAAATGAGGGTTCAGGGACCACATGCATATGAACTGTCGTTCTGTGGCAGACAAGAACAAGAACATGCACAC
GACCATGAGGATGAACATCAGCATGAACATCTAGAGGGTTTGGAAGGGGCAGAAAGATCGTCATCACATAGAGAAACAAT
CAGTGATGGAGTCAGTTACCAGATGCCGGAAAACAGCTATGGGCGACCAGAGCATGATATAGATTACATTGAGGATTGCA
CCCCGCATGGTTGTCTGAGTGACCTCAAGTTTAAGCAAGAGGACAAGGACTGTAGTAAACTAACCAGCATGGATAAGAAT
AGGTAGCAGAGAGATCACACCATATGCCATTTTCCTGGAAATTATTTTTGTGGGAGATTATGGCTCATATGCTTATGATA
ATTCTGATTGATGTTCAATCCACTGTAACCCCTAGTATGAACATGTGCTTTTCGAGATCCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis