Browse Element(s) Details


Os.16079.1.S1_at

Description gb:AK119462.1
DB_XREF= gi:37989085
TID=Os.16079.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16079 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-133-E11, full insert sequence.
FL= gb:AK119462.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g062609/11Gamma-tubulin complex component 4 homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06240OsAffx.14569.1.S1_at11/115+3134563..3136250Leucine Rich Repeat family protein
LOC_Os05g06250OsAffx.26756.1.S1_at10/115+3156894..3158960hypothetical protein
LOC_Os05g06260Os.16079.1.S1_at9/115+3159599..3166113Gamma-tubulin complex component 4 homolog, putative, expressed
LOC_Os05g06270Os.8381.1.S1_at11/115+3167813..3173736VIP2 protein, putative, expressed
LOC_Os05g06280Os.8608.2.S1_x_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280OsAffx.26757.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.8608.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.9766.1.S1_at11/115+3181348..3192111kinesin motor family protein, putative, expressed
LOC_Os05g06280Os.8608.1.S1_a_at11/115+3181348..3192111kinesin motor family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007020biological_processmicrotubule nucleation
GO:0005635cellular_componentnuclear envelope
GO:0009898cellular_componentinternal side of plasma membrane
GO:0015631molecular_functiontubulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16079.1.S1_at--494--5191Chr05:3160433..3160457 (25 bp)
GAATTCGCTGTACACTATCTTAAGG
LOC_Os05g06260
Os.16079.1.S1_at--106--1071Chr05:3160394..3160418 (25 bp)
AGGGAGTCAGAGAGCGCCTTTCCTG
LOC_Os05g06260
Os.16079.1.S1_at--1150--131Chr05:3160352..3160371 (20 bp)
ATTACAACTCTTTCTTCGAGACCAC
LOC_Os05g06260
Os.16079.1.S1_at--205--2731Chr05:3159952..3159976 (25 bp)
AAGCACTGCAGGTACCCAGCTGTAA
LOC_Os05g06260
Os.16079.1.S1_at--789--4351Chr05:3159937..3159961 (25 bp)
CCAGCTGTAACCATCATCGTTCTAA
LOC_Os05g06260
Os.16079.1.S1_at--893--9471Chr05:3159917..3159941 (25 bp)
TCTAAGAAGCGCCTTTTCTTTCTGG
LOC_Os05g06260
Os.16079.1.S1_at--510--6851Chr05:3159823..3159847 (25 bp)
GTTTGCCCTGTAAAGTGTGAGTGCT
LOC_Os05g06260
Os.16079.1.S1_at--829--191NONE
ATTTCTCGCTTTGTCATCTGCTAAT
NONE
Os.16079.1.S1_at--288--3031NONE
AATGCCAGCTTTTTCAACCTTTGAG
NONE
Os.16079.1.S1_at--763--6551Chr05:3159695..3159719 (25 bp)
GATTAAGCCATTGGACGCCATCAGA
LOC_Os05g06260
Os.16079.1.S1_at--285--4431Chr05:3159679..3159703 (25 bp)
GCCATCAGATCGTGTCCTTGGGTAA
LOC_Os05g06260
Target Sequence 
GAATTCGCTGTACACTATCTTAAGGAGCAGTCGGCTTGCAGGGAGTCAGAGAGCGCCTTTCCTGAGGCAGTTTCTGATGA
GGCTAAATTACAACTCTTTCTTCGAGACCACTGCTAGGGGGGTGATGAATTCTGCAGGCGGTAGGNTACGGCCAAGCACT
GCAGGTACCCAGCTGTAACCATCATCGTTCTAAGAAGCGCCTTTTCTTTCTGGTTTGTGATTTTACACGAAGGGGGAGAA
TTTGTAGCTGATGTAAATCATGACACTAGCATCTTAATGGAAGTTTGCCCTGTAAAGTGTGAGTGCTAGATTATGGTTGT
TTNGTGCTGATGGTGTGTGATTGNGCTAGCTTGTCTACATTTCTCGCTTTGTCATCTGCTAATGCCAGCTTTTTCAACCT
TTGAGCGTTGGATTAAGCCATTGGACGCCATCAGATCGTGTCCTTGGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis