Browse Element(s) Details


Os.25501.1.S1_at

Description gb:AK063522.1
DB_XREF= gi:32973540
TID=Os.25501.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-H09, full insert sequence.
FL= gb:AK063522.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0613011/11XS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06070OsAffx.14566.1.S1_at11/115+3016670..3017698seven in absentia, putative
LOC_Os05g06080OsAffx.4259.1.S1_at9/115+3020176..3021214hypothetical protein
LOC_Os05g06080OsAffx.14566.1.S1_at1/115+3020176..3021214hypothetical protein
LOC_Os05g06090OsAffx.22217.1.S1_x_at1/115+3022404..3022981hypothetical protein
LOC_Os05g06100NANA5+3023940..3025073seven in absentia, putative
LOC_Os05g06110Os.5079.1.S1_at11/115+3028794..3035004Villin-1, putative, expressed
LOC_Os05g06120OsAffx.26754.1.S1_x_at11/115+3035879..3039886Ubiquitin-conjugating enzyme family protein
LOC_Os05g06130Os.25501.1.S1_at11/115+3040871..3045616XS domain containing protein, expressed
LOC_Os05g06140OsAffx.26755.1.S1_at11/115+3047971..3052410Lipase family protein, expressed
LOC_Os05g06150Os.55427.1.S1_at11/115+3061825..3063522pentatricopeptide, putative, expressed
LOC_Os05g06160Os.21893.3.A1_at5/115+3069639..3073374Trehalose-phosphatase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25501.1.S1_at--842--611Chr05:3045115..3045139 (25 bp)
ATGCGGTGACAAATGCTCTGTTCGA
LOC_Os05g06130
Os.25501.1.S1_at--71--10631Chr05:3045135..3045159 (25 bp)
TTCGAGCTCGACATGCATAGCATTG
LOC_Os05g06130
Os.25501.1.S1_at--231--6131Chr05:3045218..3045242 (25 bp)
GAGGGAGGTGATTCAGCAAGTTATC
LOC_Os05g06130
Os.25501.1.S1_at--429--10171Chr05:3045239..3045263 (25 bp)
TATCAAGCTGTACAAGGCGACCAAG
LOC_Os05g06130
Os.25501.1.S1_at--915--8231Chr05:3045277..3045301 (25 bp)
GGCTTGGCCGCCACTTGGTTCTTCA
LOC_Os05g06130
Os.25501.1.S1_at--981--9711Chr05:3045302..3045326 (25 bp)
TCAACCTACCTTTGACCTCAATGGA
LOC_Os05g06130
Os.25501.1.S1_at--968--9871Chr05:3045403..3045427 (25 bp)
TACATATATTTTGGAGCTAGGGCTT
LOC_Os05g06130
Os.25501.1.S1_at--236--1211Chr05:3045439..3045463 (25 bp)
AGTTTGTTACTGGATATTAGCTGGA
LOC_Os05g06130
Os.25501.1.S1_at--1005--5691Chr05:3045492..3045516 (25 bp)
GACTACTAGTATTATGGGCCTCTGT
LOC_Os05g06130
Os.25501.1.S1_at--1094--4451Chr05:3045509..3045533 (25 bp)
GCCTCTGTGCTTTTATGTCCATTTG
LOC_Os05g06130
Os.25501.1.S1_at--929--2511Chr05:3045574..3045598 (25 bp)
AACTTAATTTATGGCCAGTCTGGGC
LOC_Os05g06130
Target Sequence 
ATGCGGTGACAAATGCTCTGTTCGAGCTCGACATGCATAGCATTGGTGGCAGGGATCCATTCCTGGAGCTATGGAACTAC
GAGGAGGGGCGGAAGGCGGGCACGAGGGAGGTGATTCAGCAAGTTATCAAGCTGTACAAGGCGACCAAGAGAAGGCGCTG
ATGGCTTGGCCGCCACTTGGTTCTTCATCAACCTACCTTTGACCTCAATGGATATGGTATGGAACACACATATATATACA
TGAACCAAATGCAGTACTGCATATATATACATGAACCTAATGCAGTACTACATATATTTTGGAGCTAGGGCTTTGAGACA
GTGAAGTTTGTTACTGGATATTAGCTGGAGATATATTTTGCAGCNCTCTGAACTTATGACTACTAGTATTATGGGCCTCT
GTGCTTTTATGTCCATTTGACTGGTTATGTGACTGATAGTCTGTGTATNCTACTTGCCAAACTTAATTTATGGCCAGTCT
GGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis