Browse Element(s) Details


Os.15252.1.S1_a_at

Description gb:AK065328.1
DB_XREF= gi:32975346
TID=Os.15252.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15252 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001D19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001D19, full insert sequence.
FL= gb:AK065328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0895011/11D-lactate dehydrogenase 2, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08900NANA7+4625686..4629259hypothetical protein
LOC_Os07g08910Os.1709.1.S1_x_at7/117+4629848..4633046retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g08920NANA7+4634078..4635811retrotransposon protein, putative, unclassified
LOC_Os07g08930Os.53401.1.S1_at11/117+4640809..4643229expressed protein
LOC_Os07g08940OsAffx.28355.2.S1_at11/117+4647974..4648855hypothetical protein
LOC_Os07g08950Os.15252.1.S1_a_at11/117+4651108..4657460D-lactate dehydrogenase 2, mitochondrial precursor, putative, expressed
LOC_Os07g08950Os.15252.2.S1_a_at11/117+4651108..4657460D-lactate dehydrogenase 2, mitochondrial precursor, putative, expressed
LOC_Os07g08960Os.5867.1.S1_at11/117+4657750..4661043RNA recognition motif family protein, expressed
LOC_Os07g08970OsAffx.5257.1.S1_at11/117+4661794..4665533expressed protein
LOC_Os07g08980OsAffx.21465.1.S1_x_at2/117+4672710..4673185retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g08990OsAffx.16162.1.S1_at11/117+4676105..4676369hypothetical protein
LOC_Os07g09000Os.19410.1.S1_at11/117+4680780..4685952transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15252.1.S1_a_at--871--7131Chr07:4657230..4657254 (25 bp)
GTCATTATGGACAGAGAGATCGCGG
LOC_Os07g08950
Os.15252.1.S1_a_at--225--6031Chr07:4657245..4657269 (25 bp)
GAGATCGCGGGAGAGACTGCCTCAC
LOC_Os07g08950
Os.15252.1.S1_a_at--731--1971Chr07:4657260..4657284 (25 bp)
ACTGCCTCACTACTCAACTGATTTA
LOC_Os07g08950
Os.15252.1.S1_a_at--376--1111Chr07:4657296..4657320 (25 bp)
AGTTAGAACGGCACTGGATTGTAGC
LOC_Os07g08950
Os.15252.1.S1_a_at--574--1931Chr07:4657303..4657327 (25 bp)
ACGGCACTGGATTGTAGCCAACCCA
LOC_Os07g08950
Os.15252.1.S1_a_at--1133--3951Chr07:4657362..4657386 (25 bp)
CGGATGTGCTGTTGTCGGATGTACA
LOC_Os07g08950
Os.15252.1.S1_a_at--1014--7991Chr07:4657378..4657402 (25 bp)
GGATGTACATGTACTCATCTCCAGT
LOC_Os07g08950
Os.15252.1.S1_a_at--398--7011Chr07:4657388..4657412 (25 bp)
GTACTCATCTCCAGTATGTGAACCT
LOC_Os07g08950
Os.15252.1.S1_a_at--96--6931Chr07:4657401..4657425 (25 bp)
GTATGTGAACCTGGCAACTAGAAAT
LOC_Os07g08950
Os.15252.1.S1_a_at--290--2251Chr07:4657426..4657450 (25 bp)
AAATTCTACCATGATATTCTGCTTT
LOC_Os07g08950
Os.15252.1.S1_a_at--38--9991Chr07:4657432..4657456 (25 bp)
TACCATGATATTCTGCTTTTCTTCA
LOC_Os07g08950
Target Sequence 
GTCATTATGGACAGAGAGATCGCGGGAGAGACTGCCTCACTACTCAACTGATTTACAATAATAAACAGTTAGAACGGCAC
TGGATTGTAGCCAACCCAGNCAAGTTAATAAATTTNCAGGTGCTGTAACAGTTTNCGGATGTGCTGTTGTCGGATGTACA
TGTACTCATCTCCAGTATGTGAACCTGGCAACTAGAAATAAATTCTACCATGATATTCTGCTTTTCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15252.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis