Browse Element(s) Details


Os.41641.1.S1_x_at

Description gb:NM_192176.1
DB_XREF= gi:34911435
GEN=P0431H09.18
TID=Os.41641.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41641 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0431H09.18 (P0431H09.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0431H09.18 (P0431H09.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5001011/11Clathrin assembly protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49950OsAffx.22940.5.S1_at7/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49950Os.35344.3.S1_x_at5/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49950OsAffx.22940.5.S1_x_at4/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49950Os.35344.18.S1_x_at3/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49960OsAffx.11538.2.S1_at2/111+29038459..29039197hypothetical protein
LOC_Os01g49960Os.55505.1.S1_at1/111+29038459..29039197hypothetical protein
LOC_Os01g49960Os.55505.1.S1_x_at1/111+29038459..29039197hypothetical protein
LOC_Os01g49970Os.28943.1.S1_x_at2/111+29041155..29044380retrotransposon protein, putative, unclassified
LOC_Os01g49980NANA1+29045003..29050232retrotransposon protein, putative, unclassified
LOC_Os01g49990Os.47130.4.A1_x_at1/111+29050955..29051287retrotransposon protein, putative, unclassified
LOC_Os01g50000Os.56113.1.S1_at10/111+29053436..29054074expressed protein
LOC_Os01g50010Os.41641.1.S1_x_at11/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50010Os.9037.1.S1_at10/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50020OsAffx.28355.1.S1_at11/111+29062596..29065070hypothetical protein
LOC_Os01g50020OsAffx.28355.2.S1_at3/111+29062596..29065070hypothetical protein
LOC_Os01g50030Os.27943.1.S1_s_at11/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50030Os.54115.1.S1_at11/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50030Os.27943.1.S1_a_at10/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50040Os.37509.2.S1_x_at11/111+29073422..29078192expressed protein
LOC_Os01g50040Os.37509.1.S1_at11/111+29073422..29078192expressed protein
LOC_Os01g50050Os.33696.1.S1_at11/111+29079014..29082178Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50060Os.41638.1.S1_at10/111+29083276..29086090expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41641.1.S1_x_at--337--1771Chr01:29059987..29060011 (25 bp)
ACCTGAGGTCGTAGACACCGGTGAT
LOC_Os01g50010
Os.41641.1.S1_x_at--242--9211Chr01:29060103..29060127 (25 bp)
TCCAACCCCTAGTGTATCAGCAATA
LOC_Os01g50010
Os.41641.1.S1_x_at--46--2351Chr01:29060132..29060156 (25 bp)
AAAGCAATGCTTTGGCCTTGGCTAT
LOC_Os01g50010
Os.41641.1.S1_x_at--461--10871Chr01:29060143..29060167 (25 bp)
TTGGCCTTGGCTATTATTCCTACAG
LOC_Os01g50010
Os.41641.1.S1_x_at--487--91Chr01:29059889..29060264 (25 bp)
ATTCCTACAGGTGGTGAGACGTCAA
LOC_Os01g50010
Os.41641.1.S1_x_at--758--5991Chr01:29060255..29060279 (25 bp)
GAGACGTCAACAAGTGGCACAGCTA
LOC_Os01g50010
Os.41641.1.S1_x_at--24--8971Chr01:29061170..29061194 (25 bp)
TGACAAACTCATTCTGGACAGCCTA
LOC_Os01g50010
Os.41641.1.S1_x_at--719--3251Chr01:29061257..29061281 (25 bp)
CAACCCTTTCATGGCGAGTGATCCT
LOC_Os01g50010
Os.41641.1.S1_x_at--981--6111Chr01:29061272..29061296 (25 bp)
GAGTGATCCTTTCGCTATGTCGAAT
LOC_Os01g50010
Os.41641.1.S1_x_at--266--8871Chr01:29061361..29061385 (25 bp)
TGATGATGCAGCCAAATCCCTTCGG
LOC_Os01g50010
Os.41641.1.S1_x_at--164--651Chr01:29061406..29061430 (25 bp)
ATGCAGGCATTGCTCAGGCACCCAA
LOC_Os01g50010
Target Sequence 
ACCTGAGGTCGTAGACACCGGTGATTTATTGGGATTAAGCGATCCAACCCCTAGTGTATCAGCAATAGAGGAAAGCAATG
CTTTGGCCTTGGCTATTATTCCTACAGGTGGTGAGACGTCAACAAGTGGCACAGCTACACTGCAAGATAAAGGATTTGAC
CCTACAGGATGGGAACTTGCTCTTGTTACTACCCCGAGCACCAACACAAACTCAATGGCCATGGACAGTAATTTNGGTGG
TGGATTTGACAAACTCATTCTGGACAGCCTATACGACGNGGGAACCTACAGGCAGCAGATGCAGCAGCAGCAGCTGTATG
GTTCAGCTGCCCCCAACCCTTTCATGGCGAGTGATCCTTTCGCTATGTCGAATCAAGTAGCTCCCCCACCATCAGTTCAA
ATGGCTAGCATGACTCAGCAGCCCCAGCAGATGCCTATGATGATGCAGCCAAATCCCTTCGGGCCACCACTACAGCCGCA
GCATGCAGGCATTGCTCAGGCACCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41641.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis