Browse Element(s) Details


OsAffx.28355.1.S1_at

Description tigr:9629.m04835
TID=OsAffx.28355.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5002011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49960OsAffx.11538.2.S1_at2/111+29038459..29039197hypothetical protein
LOC_Os01g49960Os.55505.1.S1_at1/111+29038459..29039197hypothetical protein
LOC_Os01g49960Os.55505.1.S1_x_at1/111+29038459..29039197hypothetical protein
LOC_Os01g49970Os.28943.1.S1_x_at2/111+29041155..29044380retrotransposon protein, putative, unclassified
LOC_Os01g49980NANA1+29045003..29050232retrotransposon protein, putative, unclassified
LOC_Os01g49990Os.47130.4.A1_x_at1/111+29050955..29051287retrotransposon protein, putative, unclassified
LOC_Os01g50000Os.56113.1.S1_at10/111+29053436..29054074expressed protein
LOC_Os01g50010Os.41641.1.S1_x_at11/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50010Os.9037.1.S1_at10/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50020OsAffx.28355.1.S1_at11/111+29062596..29065070hypothetical protein
LOC_Os01g50020OsAffx.28355.2.S1_at3/111+29062596..29065070hypothetical protein
LOC_Os01g50030Os.27943.1.S1_s_at11/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50030Os.54115.1.S1_at11/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50030Os.27943.1.S1_a_at10/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50040Os.37509.2.S1_x_at11/111+29073422..29078192expressed protein
LOC_Os01g50040Os.37509.1.S1_at11/111+29073422..29078192expressed protein
LOC_Os01g50050Os.33696.1.S1_at11/111+29079014..29082178Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50060Os.41638.1.S1_at10/111+29083276..29086090expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28355.1.S1_at--796--8972Chr07:4647623..4647647 (25 bp)
TGAAAATACCATGGACACCTCCTCT
NONE
OsAffx.28355.1.S1_at--1123--1751Chr01:29063496..29063520 (25 bp)
ACCTCCTCTTAATGCATGTGCTGTT
LOC_Os01g50020
OsAffx.28355.1.S1_at--25--4751Chr01:29063477..29063501 (25 bp)
GCTGTTACATTACTTGCGCATGCTA
LOC_Os01g50020
OsAffx.28355.1.S1_at--935--8511Chr01:29063400..29063420 (21 bp)
TGGAAGCATGAGTACTGGCAGCCTA
LOC_Os01g50020
OsAffx.28355.1.S1_at--435--9931Chr01:29063021..29063408 (25 bp)
TACTGGCAGCCTACTATGAAGACTA
LOC_Os01g50020
OsAffx.28355.1.S1_at--317--5671Chr01:29062913..29062937 (25 bp)
GACATGTTACAGCTACCAACTTCAG
LOC_Os01g50020
OsAffx.28355.1.S1_at--955--272Chr07:4646985..4647009 (25 bp)
ATATGGCCCAGACCCATTGGATGGT
NONE
OsAffx.28355.1.S1_at--1049--8712Chr07:4646941..4646960 (20 bp)
TGTCGATCTCGGGTTGGGCTATTCT
NONE
OsAffx.28355.1.S1_at--237--6632Chr07:4646929..4646953 (25 bp)
GTTGGGCTATTCTTCTTATCATCTA
NONE
OsAffx.28355.1.S1_at--443--10511Chr01:29062738..29062762 (25 bp)
TTGAGGAGCTTTCCGAACCAGGACC
LOC_Os01g50020
OsAffx.28355.1.S1_at--434--6472Chr07:4646761..4646785 (25 bp)
GATACACTATGCTCCTTGCAACTAA
NONE
Target Sequence 
TGAAAATACCATGGACACCTCCTCTTAATGCATGTGCTGTTACATTACTTGCGCATGCTAGAGAGAGTTTTTCATGCAAA
TGCAAGATTAAAGGAAGTCATACTATCGTGGGGTTATGGAAGCATGAGTACTGGCAGCCTACTATGAAGACTAGTGACTG
GTATACAAAGAGTTGCACATATTCATGGGTATCACTGAACTCCAAGTTAATTAATCTGAATGAAGTGATTCCAGTTGACA
TGTTACAGCTACCAACTTCAGATGAGGAGTTTGTAATATGGCCCAGACCCATTGGATGGTTTGCAACAAGTGATCAGTTT
GTCGATCTCGGGTTGGGCTATTCTTCTTATCATCTAGTCAGGGTAATAACTACGGTTGTTTCACTGAAGAAATCCTGGTT
GCGGGAAATTATTGAGGAGCTTTCCGAACCAGGACCTCAAGGACAAACATTGCAAAGGCAGGATAACAAGCTTTGGGAGT
CACTATTGCTTAATGATCATGATACACTATGCTCCTTGCAACTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28355.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis