Browse Element(s) Details


Os.37509.1.S1_at

Description gb:AK064145.1
DB_XREF= gi:32974163
TID=Os.37509.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.37509 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0431H09.21 (P0431H09.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-C04, full insert sequence.
FL= gb:AK064145.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5004011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49980NANA1+29045003..29050232retrotransposon protein, putative, unclassified
LOC_Os01g49990Os.47130.4.A1_x_at1/111+29050955..29051287retrotransposon protein, putative, unclassified
LOC_Os01g50000Os.56113.1.S1_at10/111+29053436..29054074expressed protein
LOC_Os01g50010Os.41641.1.S1_x_at11/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50010Os.9037.1.S1_at10/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50020OsAffx.28355.1.S1_at11/111+29062596..29065070hypothetical protein
LOC_Os01g50020OsAffx.28355.2.S1_at3/111+29062596..29065070hypothetical protein
LOC_Os01g50030Os.27943.1.S1_s_at11/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50030Os.54115.1.S1_at11/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50030Os.27943.1.S1_a_at10/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50040Os.37509.2.S1_x_at11/111+29073422..29078192expressed protein
LOC_Os01g50040Os.37509.1.S1_at11/111+29073422..29078192expressed protein
LOC_Os01g50050Os.33696.1.S1_at11/111+29079014..29082178Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50060Os.41638.1.S1_at10/111+29083276..29086090expressed protein
LOC_Os01g50070NANA1+29095823..29096273multidrug resistance protein 1 homolog, putative
LOC_Os01g50080Os.41637.1.S1_at11/111+29101128..29107198ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37509.1.S1_at--1005--651Chr01:29077651..29077675 (25 bp)
ATGCAATACTACATCCGTTCCATGT
LOC_Os01g50040
Os.37509.1.S1_at--903--6691Chr01:29077667..29077691 (25 bp)
GTTCCATGTTTCCTATTTGCCAGGA
LOC_Os01g50040
Os.37509.1.S1_at--1041--8191Chr01:29077689..29077713 (25 bp)
GGAAGTTCTCCTACAGTGCAGCCAT
LOC_Os01g50040
Os.37509.1.S1_at--1125--5631Chr01:29077732..29077756 (25 bp)
GACGGTCGGTCCACTAAAATCTGCT
LOC_Os01g50040
Os.37509.1.S1_at--746--3051Chr01:29077749..29077773 (25 bp)
AATCTGCTCTACTGGCTTAACTATT
LOC_Os01g50040
Os.37509.1.S1_at--191--8431Chr01:29077819..29077843 (25 bp)
GGCCGGCCATAGTTTATAGTCCATC
LOC_Os01g50040
Os.37509.1.S1_at--353--291Chr01:29077834..29077858 (25 bp)
ATAGTCCATCAGCATCATTAGGTTC
LOC_Os01g50040
Os.37509.1.S1_at--71--5891Chr01:29077884..29077908 (25 bp)
GAGCGACCGGAGTACCATAGTGTAT
LOC_Os01g50040
Os.37509.1.S1_at--398--4971Chr01:29077972..29077996 (25 bp)
GCATCAGTTTTGGAGCTTGTCAGCT
LOC_Os01g50040
Os.37509.1.S1_at--617--7111Chr01:29077990..29078014 (25 bp)
GTCAGCTCGGCTACATTGCAATATC
LOC_Os01g50040
Os.37509.1.S1_at--163--3011Chr01:29078061..29078085 (25 bp)
AATGAAGAATGCTCAACCCTTCTCC
LOC_Os01g50040
Target Sequence 
ATGCAATACTACATCCGTTCCATGTTTCCTATTTGCCAGGAAGTTCTCCTACAGTGCAGCCATGCATCTATTAGAGGCTG
GGACGGTCGGTCCACTAAAATCTGCTCTACTGGCTTAACTATTACTNCNAAATTTTGATCACACGAGTTCTCATTTTTAG
TTTATCATGGCCGGCCATAGTTTATAGTCCATCAGCATCATTAGGTTCAGTAGCATCTGCAGCTGAATCTGCGGAGCGAC
CGGAGTACCATAGTGTATTATTATTGATAGTGTTCAGATTTGTGCATAGACCACTGGGACAGAAGAGGTTTGATGTACAG
AGCATCAGTTTTGGAGCTTGTCAGCTCGGCTACATTGCAATATCCAACGACAGAATGAGGCAGGATCAGATCAGGTATCT
TGTGACGAAGAATGAAGAATGCTCAACCCTTCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis