Browse Element(s) Details


Os.41638.1.S1_at

Description gb:NM_192182.1
DB_XREF= gi:34911447
GEN=P0431H09.24
TID=Os.41638.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0431H09.24 (P0431H09.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0431H09.24 (P0431H09.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5006010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50010Os.41641.1.S1_x_at11/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50010Os.9037.1.S1_at10/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50020OsAffx.28355.1.S1_at11/111+29062596..29065070hypothetical protein
LOC_Os01g50020OsAffx.28355.2.S1_at3/111+29062596..29065070hypothetical protein
LOC_Os01g50030Os.27943.1.S1_s_at11/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50030Os.54115.1.S1_at11/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50030Os.27943.1.S1_a_at10/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50040Os.37509.2.S1_x_at11/111+29073422..29078192expressed protein
LOC_Os01g50040Os.37509.1.S1_at11/111+29073422..29078192expressed protein
LOC_Os01g50050Os.33696.1.S1_at11/111+29079014..29082178Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50060Os.41638.1.S1_at10/111+29083276..29086090expressed protein
LOC_Os01g50070NANA1+29095823..29096273multidrug resistance protein 1 homolog, putative
LOC_Os01g50080Os.41637.1.S1_at11/111+29101128..29107198ABC transporter family protein, expressed
LOC_Os01g50090NANA1+29109928..29112744retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41638.1.S1_at--317--8351Chr01:29085033..29085057 (25 bp)
GGCTGGTGACGTCCAAGCATTGCTA
LOC_Os01g50060
Os.41638.1.S1_at--332--6791Chr01:29084711..29084735 (25 bp)
GTTATTCGGCTAGTGGAGTACCTTT
LOC_Os01g50060
Os.41638.1.S1_at--463--8011Chr01:29084697..29084721 (25 bp)
GGAGTACCTTTACAATCTGTCGTCA
LOC_Os01g50060
Os.41638.1.S1_at--1069--4811NONE
GCTCTTGGAGCGGTATGTCTAGGAT
NONE
Os.41638.1.S1_at--1157--6011Chr01:29084178..29084202 (25 bp)
GAGAGTAACTGCTGTCATGCTTGCT
LOC_Os01g50060
Os.41638.1.S1_at--652--9611Chr01:29084164..29084188 (25 bp)
TCATGCTTGCTGACACACTCGAAAG
LOC_Os01g50060
Os.41638.1.S1_at--130--8171Chr01:29084032..29084052 (21 bp)
GGAACGATTTTCACCAAGACGATTT
LOC_Os01g50060
Os.41638.1.S1_at--773--10431Chr01:29083588..29083612 (25 bp)
TTATGCCGCCAGATTGCGCAGCAAA
LOC_Os01g50060
Os.41638.1.S1_at--724--5051Chr01:29083571..29083595 (25 bp)
GCAGCAAACTGGTATCCTGTTGGAT
LOC_Os01g50060
Os.41638.1.S1_at--1158--6591Chr01:29083553..29083577 (25 bp)
GTTGGATCCAATGTACACCTTAGCT
LOC_Os01g50060
Os.41638.1.S1_at--920--3551Chr01:29083468..29083492 (25 bp)
CATACGGGAGGAACGCTTGGCTTCT
LOC_Os01g50060
Target Sequence 
GGCTGGTGACGTCCAAGCATTGCTAGGTGTTATTCGGCTAGTGGAGTACCTTTACAATCTGTCGTCATTTCATAAACATG
AGAATGTTCATGTCGTGGTAGATGCTGGGACAGGCACAACAGCTGTGGGGTTAGCTCTTGGAGCGGTATGTCTAGGATTG
CATTGGAGAGTAACTGCTGTCATGCTTGCTGACACACTCGAAAGATATAAAGAACGAGAGAAGTCCTTAATATCTGACTT
TAAGAAGCTTTGCCATAACAACTACCATGAAATGGTGGGAGAAAATGATATTGGTGACAGTTTAGTTGAATGGGTGGAAC
GATTTTCACCAAGACGATTTGGCAAGGTGCTGAACGGTGAAATTGCATTATGCCGCCAGATTGCGCAGCAAACTGGTATC
CTGTTGGATCCAATGTACACCTTAGCTGGTTGGGAGCAAGCTGTGGATCTATGTGTTGGAGACAGTAGAACCAAAGTGGT
GATGATCCATACGGGAGGAACGCTTGGCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis