Browse Element(s) Details


Os.37509.2.S1_x_at

Description gb:NM_192179.1
DB_XREF= gi:34911441
GEN=P0431H09.21
TID=Os.37509.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37509 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0431H09.21 (P0431H09.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0431H09.21 (P0431H09.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5004011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49980NANA1+29045003..29050232retrotransposon protein, putative, unclassified
LOC_Os01g49990Os.47130.4.A1_x_at1/111+29050955..29051287retrotransposon protein, putative, unclassified
LOC_Os01g50000Os.56113.1.S1_at10/111+29053436..29054074expressed protein
LOC_Os01g50010Os.41641.1.S1_x_at11/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50010Os.9037.1.S1_at10/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50020OsAffx.28355.1.S1_at11/111+29062596..29065070hypothetical protein
LOC_Os01g50020OsAffx.28355.2.S1_at3/111+29062596..29065070hypothetical protein
LOC_Os01g50030Os.27943.1.S1_s_at11/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50030Os.54115.1.S1_at11/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50030Os.27943.1.S1_a_at10/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50040Os.37509.2.S1_x_at11/111+29073422..29078192expressed protein
LOC_Os01g50040Os.37509.1.S1_at11/111+29073422..29078192expressed protein
LOC_Os01g50050Os.33696.1.S1_at11/111+29079014..29082178Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50060Os.41638.1.S1_at10/111+29083276..29086090expressed protein
LOC_Os01g50070NANA1+29095823..29096273multidrug resistance protein 1 homolog, putative
LOC_Os01g50080Os.41637.1.S1_at11/111+29101128..29107198ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37509.2.S1_x_at--254--4591Chr01:29074219..29074243 (25 bp)
GCGAACCAGCGCTTTGTTTTGCTCT
LOC_Os01g50040
Os.37509.2.S1_x_at--330--331Chr01:29074873..29074897 (25 bp)
ATACTTACTTGATGGCTTCGACTAA
LOC_Os01g50040
Os.37509.2.S1_x_at--458--5411Chr01:29075041..29075065 (25 bp)
GAAGCGTTACAATCCAAGCATGTCT
LOC_Os01g50040
Os.37509.2.S1_x_at--62--2711Chr01:29075056..29075080 (25 bp)
AAGCATGTCTCCTGTTATCCTAAAG
LOC_Os01g50040
Os.37509.2.S1_x_at--619--6451Chr01:29075194..29075213 (20 bp)
GATCACAGTGGGTAGCATTGACCAG
LOC_Os01g50040
Os.37509.2.S1_x_at--172--2111Chr01:29075217..29075241 (25 bp)
ACATGCAGAAGTAGTCGTTGGCGAC
LOC_Os01g50040
Os.37509.2.S1_x_at--335--7051Chr01:29076144..29076168 (25 bp)
GTAACTAAGGCTTTGCTTGGACAGA
LOC_Os01g50040
Os.37509.2.S1_x_at--480--1251Chr01:29076602..29076626 (25 bp)
AGATTAGGATTTGGACTTCGTCGAA
LOC_Os01g50040
Os.37509.2.S1_x_at--519--5931Chr01:29076886..29076910 (25 bp)
GAGCATGATTGCATTCCAGATGAAC
LOC_Os01g50040
Os.37509.2.S1_x_at--582--8511Chr01:29077085..29077109 (25 bp)
TGGAACCAGTCCTCAGATCCTAAAG
LOC_Os01g50040
Os.37509.2.S1_x_at--713--6911Chr01:29077141..29077165 (25 bp)
GTATGAGTCAGCAAGTCCTGAGCAA
LOC_Os01g50040
Target Sequence 
GCGAACCAGCGCTTTGTTTTGCTCTCNGATAGCTGTGTTCCTCTGTACNATTTCAGCTACATATATACTTACTTGATGGC
TTCGACTAANAGTTTTGTAGACAGTTTTGTTGACAAGACCGAGAAGCGTTACAATCCAAGCATGTCTCCTGTTATCCTAA
AGGACAAATGGAGGAAAGGATCACAGTGGGTAGCATTGACCAGAAGACATGCAGAAGTAGTCGTTGGCGACAAACTTGTC
TTGCAAGTATTCAGAAGGCATTGCAAGATGGTAGTAACTAAGGCTTTGCTTGGACAGAAGCCTAATTATCGAAGATTAGG
ATTTGGACTTCGTCGAAAGCAGATATCGAAAGGATCTACTCGAATGGAGCATGATTGCATTCCAGATGAACACTATGTGC
AGACATTATTTTCAATCAATGGACATGAAAATGAACTGGAAAGAAGAACTTTGACATATACATCATGGAACCAGTCCTCA
GATCCTAAAGACAAAATGACTTGGCATCCAATGACATTTGAGTATGAGTCAGCAAGTCCTGAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37509.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis