Browse Element(s) Details


Os.56113.1.S1_at

Description gb:AK109275.1
DB_XREF= gi:32994484
TID=Os.56113.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56113 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-188-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-188-A11, full insert sequence.
FL= gb:AK109275.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5000010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49950OsAffx.22940.5.S1_at7/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49950Os.35344.3.S1_x_at5/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49950OsAffx.22940.5.S1_x_at4/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49950Os.35344.18.S1_x_at3/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49960OsAffx.11538.2.S1_at2/111+29038459..29039197hypothetical protein
LOC_Os01g49960Os.55505.1.S1_at1/111+29038459..29039197hypothetical protein
LOC_Os01g49960Os.55505.1.S1_x_at1/111+29038459..29039197hypothetical protein
LOC_Os01g49970Os.28943.1.S1_x_at2/111+29041155..29044380retrotransposon protein, putative, unclassified
LOC_Os01g49980NANA1+29045003..29050232retrotransposon protein, putative, unclassified
LOC_Os01g49990Os.47130.4.A1_x_at1/111+29050955..29051287retrotransposon protein, putative, unclassified
LOC_Os01g50000Os.56113.1.S1_at10/111+29053436..29054074expressed protein
LOC_Os01g50010Os.41641.1.S1_x_at11/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50010Os.9037.1.S1_at10/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50020OsAffx.28355.1.S1_at11/111+29062596..29065070hypothetical protein
LOC_Os01g50020OsAffx.28355.2.S1_at3/111+29062596..29065070hypothetical protein
LOC_Os01g50030Os.27943.1.S1_s_at11/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50030Os.54115.1.S1_at11/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50030Os.27943.1.S1_a_at10/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50040Os.37509.2.S1_x_at11/111+29073422..29078192expressed protein
LOC_Os01g50040Os.37509.1.S1_at11/111+29073422..29078192expressed protein
LOC_Os01g50050Os.33696.1.S1_at11/111+29079014..29082178Farnesyl pyrophosphate synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56113.1.S1_at--212--4691Chr01:29053925..29053949 (25 bp)
GCGGTTGCGGCCATCATGCGGAAAT
LOC_Os01g50000
Os.56113.1.S1_at--1158--9611Chr01:29053912..29053936 (25 bp)
TCATGCGGAAATCGACTCGACGACG
LOC_Os01g50000
Os.56113.1.S1_at--131--9411Chr01:29053791..29053815 (25 bp)
TCGTCGTTGATGTCGCCACCGATGA
LOC_Os01g50000
Os.56113.1.S1_at--893--7234Chr12:25303997..25304021 (25 bp)
GTCGCCACCGATGAAGAGGTCCGCA
NONE
Os.56113.1.S1_at--790--4051Chr01:29053772..29053796 (25 bp)
CGATGAAGAGGTCCGCACCGCTCAC
LOC_Os01g50000
Os.56113.1.S1_at--464--4751Chr01:29053524..29053548 (25 bp)
GCTGAAAGCGGCACATCCAGCGCCT
LOC_Os01g50000
Os.56113.1.S1_at--1031--571Chr01:29053510..29053534 (25 bp)
ATCCAGCGCCTGATGAGCTGCCGCG
LOC_Os01g50000
Os.56113.1.S1_at--817--4431Chr01:29053486..29053510 (25 bp)
GCCTCATGACGTTGCAGTTCCTCGC
LOC_Os01g50000
Os.56113.1.S1_at--1058--1571Chr01:29053456..29053480 (25 bp)
AGCTCTCCCCTGTCATGGTCAAATT
LOC_Os01g50000
Os.56113.1.S1_at--329--9311Chr01:29053451..29053475 (25 bp)
TCCCCTGTCATGGTCAAATTGCAAG
LOC_Os01g50000
Os.56113.1.S1_at--846--2231Chr01:29053436..29053460 (25 bp)
AAATTGCAAGGGATCGATTCTCCTC
NONE
Target Sequence 
GCGGTTGCGGCCATCATGCGGAAATCGACTCGACGACGCCGCCATCAAGTCGCTGCCGTCGGGCGTCGGCGATGGCGGCG
CGCGGCTGCGGCCGGCGGGGGAGGCGGAGGAGGTATGCGCGGACGACCTCGCCCTCGTCGTTGATGTCGCCACCGATGAA
GAGGTCCGCACCGCTCACCAGTTCGCATGCCTCGTCGTCGTCGACACTCGCCACTCCGGTCCGGCCGCGGCCCAGCGAAC
AAGCGACGAGAAGCCGGCGGCGCGGCGCCCCCGCCGCGGACGAGCGACAAGAAGCCGGTGGTGTGGCGCCCCCACCCGAA
GCCGCCGACGACGATGAGGCCGAGCGGCGCAGAGTCGTCGACGCCGCCGCTCCCCATCCAGGTCGCGCTCAGGGTCGCCG
CGCTGAAAGCGGCACATCCAGCGCCTGATGAGCTGCCGCGCCTCATGACGTTGCAGTTCCTCGCCGGTCAGCTCTCCCCT
GTCATGGTCAAATTGCAAGGGATCGATTCTCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis