Browse Element(s) Details


Os.55505.1.S1_at

Description gb:AK108220.1
DB_XREF= gi:32993429
TID=Os.55505.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55505 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-E09, full insert sequence.
FL= gb:AK108220.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2559011/11expressed protein
LOC_Os01g499601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25570OsAffx.12190.1.S1_at9/112+14931413..14933136hypothetical protein
LOC_Os02g25580Os.10400.1.S1_at11/112+14936663..14956119SNARE-interacting protein KEULE, putative, expressed
LOC_Os02g25580OsAffx.32230.1.A1_x_at2/112+14936663..14956119SNARE-interacting protein KEULE, putative, expressed
LOC_Os02g25590Os.55505.1.S1_x_at11/112+14956266..14957380expressed protein
LOC_Os02g25590Os.55505.1.S1_at11/112+14956266..14957380expressed protein
LOC_Os02g25590Os.51581.1.S1_at11/112+14956266..14957380expressed protein
LOC_Os02g25600Os.45422.1.S1_x_at2/112+14958171..14959659hypothetical protein
LOC_Os02g25610NANA2+14963613..14964396hypothetical protein
LOC_Os02g25620Os.50153.1.S1_at11/112+14967978..14968728expressed protein
LOC_Os02g25630OsAffx.2747.1.S1_at11/112+14978129..14980099hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55505.1.S1_at--49--10652Chr02:14957217..14957241 (25 bp)
TTCGCTCCTTCTCCGCGAGCTCAAG
LOC_Os02g25590
Os.55505.1.S1_at--69--4832Chr02:14957199..14957223 (25 bp)
GCTCAAGAAGCTCGCAGGAAGCCAT
LOC_Os02g25590
Os.55505.1.S1_at--520--1452Chr02:14957194..14957218 (25 bp)
AGAAGCTCGCAGGAAGCCATGGCGA
LOC_Os02g25590
Os.55505.1.S1_at--887--3792Chr02:14957189..14957213 (25 bp)
CTCGCAGGAAGCCATGGCGAGTCTC
LOC_Os02g25590
Os.55505.1.S1_at--240--4391Chr02:14956937..14956961 (25 bp)
CCAAGGCGGAGCTTGGCGTCATGAC
LOC_Os02g25590
Os.55505.1.S1_at--407--1551Chr02:14956928..14956952 (25 bp)
AGCTTGGCGTCATGACGCGCGTGGC
LOC_Os02g25590
Os.55505.1.S1_at--501--8011Chr02:14956882..14956906 (25 bp)
GGAGGAAGGCGCACTCCTCCTTGGC
LOC_Os02g25590
Os.55505.1.S1_at--296--10834Chr06:2407778..2407797 (20 bp)
TTGTGTGATTTTGTGTGACTCTTGA
NONE
Os.55505.1.S1_at--673--7473Chr02:14956826..14956850 (25 bp)
GTGTGATTTTGTGTGACTCTTGATT
LOC_Os02g25590
Os.55505.1.S1_at--53--6552Chr02:14956822..14956846 (25 bp)
GATTTTGTGTGACTCTTGATTTTCT
LOC_Os02g25590
Os.55505.1.S1_at--887--10832Chr02:14956818..14956842 (25 bp)
TTGTGTGACTCTTGATTTTCTTCTA
LOC_Os02g25590
Target Sequence 
TTCGCTCCTTCTCCGCGAGCTCAAGAAGCTCGCAGGAAGCCATGGCGAGTCTCGCATCCGGCCCCCCATGGATGACGTCG
TCACCGACGCGTCGCGGCTTCTTCCCGGACGACCTCGACAACTTCACCGCTCCACCGACGCATCGCGGCTTCTCCCCCGT
GACGCCTCCTCATCTCCCCCACCAGGGCGGCGCAGAGGCAGGGAGGGGTCGGCGTGGCCAGGGGCGTGGCGGCGCTAGCC
CCGCCCTGGAGCGTGGTGGACGGGCTCGGCGTCGACCTGGCCAAGGCGGAGCTTGGCGTCATGACGCGCGTGGCGGCGGA
GCTCGGCGGCGGCCGGGAGGAAGGCGCACTCCTCCTTGGCGTTCTTGGCGGCGGCGTTCTTGATTTTTTTTGTGTGATTT
TGTGTGACTCTTGATTTTCTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55505.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis