Browse Element(s) Details


Os.10400.1.S1_at

Description gb:AK111848.1
DB_XREF= gi:37988511
TID=Os.10400.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10400 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023148D21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023148D21, full insert sequence.
FL= gb:AK111848.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2558011/11SNARE-interacting protein KEULE, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25540NANA2+14915115..14916974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g25550OsAffx.8589.1.S1_at1/112+14920672..14923749transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g25560OsAffx.8455.1.S1_at2/112+14925377..14928977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g25570OsAffx.12190.1.S1_at9/112+14931413..14933136hypothetical protein
LOC_Os02g25580Os.10400.1.S1_at11/112+14936663..14956119SNARE-interacting protein KEULE, putative, expressed
LOC_Os02g25580OsAffx.32230.1.A1_x_at2/112+14936663..14956119SNARE-interacting protein KEULE, putative, expressed
LOC_Os02g25590Os.55505.1.S1_x_at11/112+14956266..14957380expressed protein
LOC_Os02g25590Os.55505.1.S1_at11/112+14956266..14957380expressed protein
LOC_Os02g25590Os.51581.1.S1_at11/112+14956266..14957380expressed protein
LOC_Os02g25600Os.45422.1.S1_x_at2/112+14958171..14959659hypothetical protein
LOC_Os02g25610NANA2+14963613..14964396hypothetical protein
LOC_Os02g25620Os.50153.1.S1_at11/112+14967978..14968728expressed protein
LOC_Os02g25630OsAffx.2747.1.S1_at11/112+14978129..14980099hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0006886biological_processintracellular protein transport
GO:0009306biological_processprotein secretion
GO:0000300cellular_componentperipheral to membrane of membrane fraction
GO:0005802cellular_componentGolgi trans face
GO:0005829cellular_componentcytosol
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10400.1.S1_at--492--7811Chr02:14937278..14937466 (25 bp)
GGTCGGAGTTACGTGCTGTGCACAA
LOC_Os02g25580
Os.10400.1.S1_at--540--7311Chr02:14937266..14937290 (25 bp)
GTGCTGTGCACAAGCTTACATCCAA
LOC_Os02g25580
Os.10400.1.S1_at--704--7131Chr02:14937228..14937252 (25 bp)
GTCATACTTGGTTCATCTAGTCTGG
LOC_Os02g25580
Os.10400.1.S1_at--907--5451Chr02:14937077..14937101 (25 bp)
GAACTGACGCTGGATGATCTTCAAA
LOC_Os02g25580
Os.10400.1.S1_at--783--8311Chr02:14937018..14937042 (25 bp)
GGCTCTATCTAGATTTGCTCCATTT
LOC_Os02g25580
Os.10400.1.S1_at--993--151Chr02:14936948..14936972 (25 bp)
ATTATGCACGGGTTGATCTCTATAC
LOC_Os02g25580
Os.10400.1.S1_at--1025--9071Chr02:14936885..14936909 (25 bp)
TGCTAGGGAGAGTCCGCACAACATT
LOC_Os02g25580
Os.10400.1.S1_at--599--751Chr02:14936839..14936863 (25 bp)
ATGTACATAACAGTGGCCGGCAGAT
LOC_Os02g25580
Os.10400.1.S1_at--105--9791Chr02:14936805..14936829 (25 bp)
TAACGATTTTCTCGATTGGGCCAAT
LOC_Os02g25580
Os.10400.1.S1_at--414--3191Chr02:14936784..14936808 (25 bp)
CAATGATCGATTGGTTGCCTTCTCC
LOC_Os02g25580
Os.10400.1.S1_at--325--6691Chr02:14936771..14936795 (25 bp)
GTTGCCTTCTCCACGGAATGTGAGA
LOC_Os02g25580
Target Sequence 
GGTCGGAGTTACGTGCTGTGCACAAGCTTACATCCAAGCTAAAGCGGGAAGTCATACTTGGTTCATCTAGTCTGGATGAT
CCTCCCCAGTTCATCACGAAACTGAAGATGATGTCAGTCGATGAACTGACGCTGGATGATCTTCAAATATAAATAGCAAC
ACTGCACACATGGAATTATGCGGCTCTATCTAGATTTGCTCCATTTGTAGCTATATATATANTTTTTAATCTGTGATTTG
TAGGACTAGTTATTATGCACGGGTTGATCTCTATACCGCAGGTTGTCAATACGAGGGGCTGCATCATATTCATTTGCTAG
GGAGAGTCCGCACAACATTAGGTGATTCTTAACGGAATGAATGTACATAACAGTGGCCGGCAGATGTAACTATGTAACGA
TTTTCTCGATTGGGCCAATGATCGATTGGTTGCCTTCTCCACGGAATGTGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis