Browse Element(s) Details


OsAffx.2747.1.S1_at

Description tigr:9630.m02405
TID=OsAffx.2747.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2563011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25580Os.10400.1.S1_at11/112+14936663..14956119SNARE-interacting protein KEULE, putative, expressed
LOC_Os02g25580OsAffx.32230.1.A1_x_at2/112+14936663..14956119SNARE-interacting protein KEULE, putative, expressed
LOC_Os02g25590Os.55505.1.S1_x_at11/112+14956266..14957380expressed protein
LOC_Os02g25590Os.55505.1.S1_at11/112+14956266..14957380expressed protein
LOC_Os02g25590Os.51581.1.S1_at11/112+14956266..14957380expressed protein
LOC_Os02g25600Os.45422.1.S1_x_at2/112+14958171..14959659hypothetical protein
LOC_Os02g25610NANA2+14963613..14964396hypothetical protein
LOC_Os02g25620Os.50153.1.S1_at11/112+14967978..14968728expressed protein
LOC_Os02g25630OsAffx.2747.1.S1_at11/112+14978129..14980099hypothetical protein
LOC_Os02g25640Os.9822.1.S1_a_at11/112+14985794..14987804Cupin family protein, expressed
LOC_Os02g25640Os.9822.3.S1_x_at11/112+14985794..14987804Cupin family protein, expressed
LOC_Os02g25650NANA2+14994734..14998249hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008417molecular_functionfucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2747.1.S1_at--375--1811Chr02:14978763..14978787 (25 bp)
ACCCACTACCGCCATGGATGTACAT
LOC_Os02g25630
OsAffx.2747.1.S1_at--494--831Chr02:14978750..14978774 (25 bp)
ATGGATGTACATGCACCTGCAGCAC
LOC_Os02g25630
OsAffx.2747.1.S1_at--772--5051Chr02:14978732..14978756 (25 bp)
GCAGCACGACGTACTTCAACCGCAA
LOC_Os02g25630
OsAffx.2747.1.S1_at--1089--10611Chr02:14978622..14978646 (25 bp)
TTCGTGCTCGGACTGTTCCTGGTCT
LOC_Os02g25630
OsAffx.2747.1.S1_at--963--7991Chr02:14978573..14978597 (25 bp)
GGATGTTCCCGTGCCACGATGCTGC
LOC_Os02g25630
OsAffx.2747.1.S1_at--444--3811Chr02:14978401..14978547 (25 bp)
CTCCACCCGAGGAACGTGAGAACAT
LOC_Os02g25630
OsAffx.2747.1.S1_at--622--9171Chr02:14978374..14978398 (25 bp)
TGCCCCGTGTGCAGCAGGAGCTCAA
LOC_Os02g25630
OsAffx.2747.1.S1_at--377--9711Chr02:14978353..14978377 (25 bp)
TCAACTTTACCACTGCCGGAGAGCA
LOC_Os02g25630
OsAffx.2747.1.S1_at--502--9411Chr02:14978292..14978316 (25 bp)
TCGTCGTGTCGCTACATGGCGCCTA
LOC_Os02g25630
OsAffx.2747.1.S1_at--394--5011Chr02:14978223..14978247 (25 bp)
GCAGGGAATCCATGAGCGTGTTCCA
LOC_Os02g25630
OsAffx.2747.1.S1_at--588--4091Chr02:14978196..14978220 (25 bp)
CGACGCACTTGGACCGGCAACAGTC
LOC_Os02g25630
Target Sequence 
ACCCACTACCGCCATGGATGTACATGCACCTGCAGCACGACGTACTTCAACCGCAACGGCAATGAGCCGCGCTTCTTCTG
CGACGACGGGCTGGACGCATTGTGGCGCGTCGACTGGATGGTGCTCCTCTCCGACAACTACTTCGTGCTCGGACTGTTCC
TGGTCTCGCGCATCGAGCGCGTGCTGCCGCGGATGTTCCCGTGCCACGATGCTGCGTTCCACCTCCTCGGCCGCTACCTG
CTCCACCCGAGGAACGTGAGAACATCCTGCCCCGTGTGCAGCAGGAGCTCAACTTTACCACTGCCGGAGAGCAGCCGGGC
GGCGCGGCCGGGGAGGCGCAAGCCGGTGCTCGTCGTGTCGCTACATGGCGCCTACTCCGAGAGGATCAAGGACCTATACT
ACGAGCAGGACATAGCAGGCAGGGAATCCATGAGCGTGTTCCAGCCGACGCACTTGGACCGGCAACAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2747.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis