Browse Element(s) Details


Os.50153.1.S1_at

Description gb:AK119952.1
DB_XREF= gi:37989575
TID=Os.50153.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50153 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-C06, full insert sequence.
FL= gb:AK119952.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2562011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25580Os.10400.1.S1_at11/112+14936663..14956119SNARE-interacting protein KEULE, putative, expressed
LOC_Os02g25580OsAffx.32230.1.A1_x_at2/112+14936663..14956119SNARE-interacting protein KEULE, putative, expressed
LOC_Os02g25590Os.55505.1.S1_x_at11/112+14956266..14957380expressed protein
LOC_Os02g25590Os.55505.1.S1_at11/112+14956266..14957380expressed protein
LOC_Os02g25590Os.51581.1.S1_at11/112+14956266..14957380expressed protein
LOC_Os02g25600Os.45422.1.S1_x_at2/112+14958171..14959659hypothetical protein
LOC_Os02g25610NANA2+14963613..14964396hypothetical protein
LOC_Os02g25620Os.50153.1.S1_at11/112+14967978..14968728expressed protein
LOC_Os02g25630OsAffx.2747.1.S1_at11/112+14978129..14980099hypothetical protein
LOC_Os02g25640Os.9822.1.S1_a_at11/112+14985794..14987804Cupin family protein, expressed
LOC_Os02g25640Os.9822.3.S1_x_at11/112+14985794..14987804Cupin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50153.1.S1_at--141--7231Chr02:14968196..14968220 (25 bp)
GTCGACTGCCACCTTAGGATTTGAA
LOC_Os02g25620
Os.50153.1.S1_at--527--8611Chr02:14968223..14968247 (25 bp)
TGGTGCTCTACAACAGGGACGGCGC
LOC_Os02g25620
Os.50153.1.S1_at--742--8871Chr02:14968267..14968291 (25 bp)
TGATGGCCCTGGTCCCTGGAGGTCA
LOC_Os02g25620
Os.50153.1.S1_at--1018--7091Chr02:14968428..14968452 (25 bp)
GTCACTCTGTTTCCATATCTATGTC
LOC_Os02g25620
Os.50153.1.S1_at--659--591Chr02:14968448..14968472 (25 bp)
ATGTCCACGGTTCATTTGGGTTCTG
LOC_Os02g25620
Os.50153.1.S1_at--536--4051Chr02:14968494..14968518 (25 bp)
CGAGTCCACATTTCGGTTCTTCAGT
LOC_Os02g25620
Os.50153.1.S1_at--354--9531Chr02:14968511..14968535 (25 bp)
TCTTCAGTTTTGTTCCGGTAAGGCA
LOC_Os02g25620
Os.50153.1.S1_at--839--10311Chr02:14968537..14968561 (25 bp)
TTTCTAATTTTCGTTGACTGCCCCG
LOC_Os02g25620
Os.50153.1.S1_at--610--4311Chr02:14968574..14968598 (25 bp)
CCTTCCTACTTTTCGTGGACATCAG
LOC_Os02g25620
Os.50153.1.S1_at--529--1991Chr02:14968612..14968636 (25 bp)
ACTGCCATGTGTGTGAGAGCGACTT
LOC_Os02g25620
Os.50153.1.S1_at--370--3351Chr02:14968679..14968703 (25 bp)
CACGATTATCGTCCTTGCTATGAAA
LOC_Os02g25620
Target Sequence 
GTCGACTGCCACCTTAGGATTTGAAGGTGGTGCTCTACAACAGGGACGGCGCCACTGTGCCACCATGGTCATGATGGCCC
TGGTCCCTGGAGGTCAGGAGGGCAGGGAGGAGACCTCGCTCCGTGACCCCGACGCCGCCGCCGCCGCCGCCGGTTCCTGC
ACCATCGTGGGCTCGCGGCAATGTCGCCCCCTTACATCTTCTGTGCCGCGCCATCCATCACCATTCACCACGGTCACTCT
GTTTCCATATCTATGTCCACGGTTCATTTGGGTTCTGGTAAGGGAGTTCCTACTCATCCGAGTCCACATTTCGGTTCTTC
AGTTTTGTTCCGGTAAGGCAATTTCTAATTTTCGTTGACTGCCCCGCTTGCTGATTTCCCTTCCTACTTTTCGTGGACAT
CAGGAAGAGGAGGTCCACTGCCATGTGTGTGAGAGCGACTTGATCTAATTTTTCATGCTTGTGGTGTACATTGAAATTTT
CTTCACGATTATCGTCCTTGCTATGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis