Browse Element(s) Details


Os.33696.1.S1_at

Description gb:AK099451.1
DB_XREF= gi:32984660
TID=Os.33696.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33696 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative farnesyl-pyrophosphate synthetase (P0431H09.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022H18, full insert sequence.
FL= gb:AK099451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5005011/11Farnesyl pyrophosphate synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50000Os.56113.1.S1_at10/111+29053436..29054074expressed protein
LOC_Os01g50010Os.41641.1.S1_x_at11/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50010Os.9037.1.S1_at10/111+29055968..29061904Clathrin assembly protein, putative, expressed
LOC_Os01g50020OsAffx.28355.1.S1_at11/111+29062596..29065070hypothetical protein
LOC_Os01g50020OsAffx.28355.2.S1_at3/111+29062596..29065070hypothetical protein
LOC_Os01g50030Os.27943.1.S1_s_at11/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50030Os.54115.1.S1_at11/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50030Os.27943.1.S1_a_at10/111+29066860..29071609Phosphoethanolamine N-methyltransferase, putative, expressed
LOC_Os01g50040Os.37509.2.S1_x_at11/111+29073422..29078192expressed protein
LOC_Os01g50040Os.37509.1.S1_at11/111+29073422..29078192expressed protein
LOC_Os01g50050Os.33696.1.S1_at11/111+29079014..29082178Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50060Os.41638.1.S1_at10/111+29083276..29086090expressed protein
LOC_Os01g50070NANA1+29095823..29096273multidrug resistance protein 1 homolog, putative
LOC_Os01g50080Os.41637.1.S1_at11/111+29101128..29107198ABC transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045337biological_processfarnesyl diphosphate biosynthesis
GO:0004161molecular_functiondimethylallyltranstransferase activity
GO:0004337molecular_functiongeranyltranstransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33696.1.S1_at--808--6011Chr01:29080115..29080139 (25 bp)
GAGATGGGTGTTTACTTTCAAAGCC
LOC_Os01g50050
Os.33696.1.S1_at--1069--10491Chr01:29079807..29079831 (25 bp)
TTCAAGCACTTGAGCGCGCTGATGA
LOC_Os01g50050
Os.33696.1.S1_at--343--2271Chr01:29079668..29079692 (25 bp)
AAATCAGATCCAGCTTGTGTTGCCA
LOC_Os01g50050
Os.33696.1.S1_at--141--10171Chr01:29079633..29079653 (21 bp)
TATAACGAACTTCATCTCCAGCGGG
LOC_Os01g50050
Os.33696.1.S1_at--382--471Chr01:29079283..29079640 (25 bp)
ATCTCCAGCGGGTGTTTTCTGAGTA
LOC_Os01g50050
Os.33696.1.S1_at--383--4751Chr01:29079237..29079261 (25 bp)
GCTGATCTCAGCCATCGAAGCACAA
LOC_Os01g50050
Os.33696.1.S1_at--738--1171Chr01:29079201..29079225 (25 bp)
AGTACGAGCGGTTCTGAAATCTTTT
LOC_Os01g50050
Os.33696.1.S1_at--370--8451Chr01:29079128..29079152 (25 bp)
GGCCAATTTTGGCATCTCGTGGATT
LOC_Os01g50050
Os.33696.1.S1_at--794--3991Chr01:29079111..29079135 (25 bp)
CGTGGATTATTCTGGTTCTTGGCTT
LOC_Os01g50050
Os.33696.1.S1_at--1125--9571Chr01:29079095..29079119 (25 bp)
TCTTGGCTTCTTGTTGGGATGTATA
LOC_Os01g50050
Os.33696.1.S1_at--476--10091Chr01:29079058..29079082 (25 bp)
TAGGTTTCTAACTTCTGGGACTTTG
LOC_Os01g50050
Target Sequence 
GAGATGGGTGTTTACTTTCAAAGCCAGGATGATTATCTGGACTGTTTTGGTGAACCAGAAATTATTGGCAAGATAGGAAG
TGACATTGAAGATTTCAAGTGTTCTTGGCTATTTGTTCAAGCACTTGAGCGCGCTGATGAGAAACAAAAAGGAGTCTTGT
TTGAAAATTATGGGAAATCAGATCCAGCTTGTGTTGCCAAAGTGAAGGATCTATATAACGAACTTCATCTCCAGCGGGTG
TTTTCTGAGTATGAAAGGGAGAGCTATGAAAAGCTGATCTCAGCCATCGAAGCACAACCGAATGAAGCAGTACGAGCGGT
TCTGAAATCTTTTNTGCACAAGATCTACAAGAGGAGCAAGTAGAACACGGCTGAAAAATAAGGCCAATTTTGGCATCTCG
TGGATTATTCTGGTTCTTGGCTTCTTGTTGGGATGTATAGCATAGGTGTGATAGGTTTCTAACTTCTGGGACTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis