Browse Element(s) Details


Os.36273.2.S1_x_at

Description gb:NM_192171.1
DB_XREF= gi:34911425
GEN=P0431H09.11
TID=Os.36273.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36273 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0431H09.11 (P0431H09.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0431H09.11 (P0431H09.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4994011/11Symplekin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49900Os.33607.1.S1_at11/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49900Os.33607.2.S1_x_at11/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49900Os.33607.2.S1_at10/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49910Os.36033.1.S1_at10/111+28993156..28994952Protein kinase domain containing protein, expressed
LOC_Os01g49920Os.53408.1.A1_at11/111+28996326..29000413Leucine Rich Repeat family protein, expressed
LOC_Os01g49920Os.47360.1.S1_x_at11/111+28996326..29000413Leucine Rich Repeat family protein, expressed
LOC_Os01g49930Os.41646.1.S1_x_at11/111+29002361..29007000expressed protein
LOC_Os01g49930Os.18107.1.A1_at11/111+29002361..29007000expressed protein
LOC_Os01g49930Os.41646.1.S1_at8/111+29002361..29007000expressed protein
LOC_Os01g49940Os.36273.2.S1_x_at11/111+29010718..29019203Symplekin, putative, expressed
LOC_Os01g49940Os.36273.1.S1_at11/111+29010718..29019203Symplekin, putative, expressed
LOC_Os01g49950OsAffx.22940.5.S1_at7/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49950Os.35344.3.S1_x_at5/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49950OsAffx.22940.5.S1_x_at4/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49950Os.35344.18.S1_x_at3/111+29026743..29036874transposon protein, putative, Mutator sub-class
LOC_Os01g49960OsAffx.11538.2.S1_at2/111+29038459..29039197hypothetical protein
LOC_Os01g49960Os.55505.1.S1_at1/111+29038459..29039197hypothetical protein
LOC_Os01g49960Os.55505.1.S1_x_at1/111+29038459..29039197hypothetical protein
LOC_Os01g49970Os.28943.1.S1_x_at2/111+29041155..29044380retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36273.2.S1_x_at--39--1071Chr01:29013629..29013653 (25 bp)
AGGGATCTGCTCATACTGGTCCGGC
LOC_Os01g49940
Os.36273.2.S1_x_at--579--11Chr01:29013605..29013629 (25 bp)
CTTTAACCCCTGCTGAAGTTCTTAT
LOC_Os01g49940
Os.36273.2.S1_x_at--711--5311Chr01:29013329..29013351 (23 bp)
GAAGGTCACTGATGCTTGCACAGCT
LOC_Os01g49940
Os.36273.2.S1_x_at--913--5111Chr01:29013312..29013336 (25 bp)
GCACAGCTTGCTTTGAACAGCGCAC
LOC_Os01g49940
Os.36273.2.S1_x_at--921--5491Chr01:29013172..29013322 (25 bp)
GAACAGCGCACGGTTGACAATGTAC
LOC_Os01g49940
Os.36273.2.S1_x_at--617--9971Chr01:29013150..29013174 (25 bp)
TACCAATTCCACTTCTTTTCATGAG
LOC_Os01g49940
Os.36273.2.S1_x_at--1040--9311Chr01:29012842..29013123 (25 bp)
TCCCAGCTTTGGTTGATTTTGTCAT
LOC_Os01g49940
Os.36273.2.S1_x_at--647--5591Chr01:29012816..29012840 (25 bp)
GAAATACTCTCCAGGCTTGTTAATA
LOC_Os01g49940
Os.36273.2.S1_x_at--1003--1691Chr01:29012136..29012160 (25 bp)
AGCCACGCTCGTTTGATGTTATTTT
LOC_Os01g49940
Os.36273.2.S1_x_at--172--731Chr01:29012010..29012145 (25 bp)
ATGTTATTTTGCAGTTACCTCCACC
LOC_Os01g49940
Os.36273.2.S1_x_at--1--3171Chr01:29011419..29011443 (25 bp)
AATTCCATTTGTGCCTGCTGCAATG
LOC_Os01g49940
Target Sequence 
AGGGATCTGCTCATACTGGTCCGGCTTTAACCCCTGCTGAAGTTCTTATAGCCATTCATGATATTAATCCTGAAAAGGAT
AGAGTTGCCCTGAAGAAGGTCACTGATGCTTGCACAGCTTGCTTTGAACAGCGCACGGTTGACAATGTACCAATTCCACT
TCTTTTCATGAGAACAGTTATTCAAGCACTTGATGCTTTCCCAGCTTTGGTTGATTTTGTCATGGAAATACTCTCCAGGC
TTGTTAATAAGCAGATATGGAAAATGCCAAAGCTGTGGGTTGGGTTCTTAAAATTGGCATATCAGACTCAGCCACGCTCG
TTTGATGTTATTTTGCAGTTACCTCCACCCCAGCTTGAAATAGCTTTGAATAAGTACCCCAATCTACGAACTCCTCTTTG
TTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAGACAGATTTTGAAAGTTCTGGGCTTCATCAATGAACCGC
ACCAGGCACCAATTCCATTTGTGCCTGCTGCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36273.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis