Browse Element(s) Details


OsAffx.870.2.S1_at

Description tigr:9629.m04821
TID=OsAffx.870.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4988011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49849NANA1+28952420..28952696NA
LOC_Os01g49860OsAffx.11537.1.S1_at11/111+28956419..28957326hypothetical protein
LOC_Os01g49870OsAffx.21485.1.S1_at10/111+28972043..28975273transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g49880OsAffx.870.2.S1_at11/111+28977628..28979732expressed protein
LOC_Os01g49890Os.27749.1.S1_at11/111+28980894..28982795Threonine synthase, chloroplast precursor, putative, expressed
LOC_Os01g49900Os.33607.1.S1_at11/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49900Os.33607.2.S1_x_at11/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49900Os.33607.2.S1_at10/111+28984450..28987346peptidyl-tRNA hydrolase family protein, expressed
LOC_Os01g49910Os.36033.1.S1_at10/111+28993156..28994952Protein kinase domain containing protein, expressed
LOC_Os01g49920Os.53408.1.A1_at11/111+28996326..29000413Leucine Rich Repeat family protein, expressed
LOC_Os01g49920Os.47360.1.S1_x_at11/111+28996326..29000413Leucine Rich Repeat family protein, expressed
LOC_Os01g49930Os.41646.1.S1_x_at11/111+29002361..29007000expressed protein
LOC_Os01g49930Os.18107.1.A1_at11/111+29002361..29007000expressed protein
LOC_Os01g49930Os.41646.1.S1_at8/111+29002361..29007000expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.870.2.S1_at--67--8471Chr01:28978431..28978455 (25 bp)
TGGCCTCGTCGCATGGGTCATTGAC
LOC_Os01g49880
OsAffx.870.2.S1_at--350--6131Chr01:28978478..28978502 (25 bp)
GAGTGGTACAACTACCTTCAGTCCG
LOC_Os01g49880
OsAffx.870.2.S1_at--691--10531Chr01:28978494..28978518 (25 bp)
TTCAGTCCGGTGGTATGTCGTCATC
LOC_Os01g49880
OsAffx.870.2.S1_at--911--4011Chr01:28978521..28978545 (25 bp)
CGTCGGAGTCGGTCTTGGAGCCCAA
LOC_Os01g49880
OsAffx.870.2.S1_at--418--6291Chr01:28978579..28978603 (25 bp)
GATGTTGCTCGACGACTCATTGCTC
LOC_Os01g49880
OsAffx.870.2.S1_at--820--3491Chr01:28978609..28978633 (25 bp)
CATGGAACAGCTTGACCGTGGAGTT
LOC_Os01g49880
OsAffx.870.2.S1_at--990--10271Chr01:28978648..28978672 (25 bp)
TTTGCGCGGGCAACCAACACAAGGA
LOC_Os01g49880
OsAffx.870.2.S1_at--189--7911Chr01:28979530..28979554 (25 bp)
GGTTCCTCGCCTTGACAATTAACAT
LOC_Os01g49880
OsAffx.870.2.S1_at--454--5051Chr01:28979592..28979616 (25 bp)
GCAGAAGACTCCATAGCTCTAGCTC
LOC_Os01g49880
OsAffx.870.2.S1_at--768--4811Chr01:28979607..28979631 (25 bp)
GCTCTAGCTCAAGTGACGGACATTG
LOC_Os01g49880
OsAffx.870.2.S1_at--1046--10751Chr01:28979632..28979656 (25 bp)
TTGAGATAACTGCATCTCCTCCTTG
LOC_Os01g49880
Target Sequence 
TGGCCTCGTCGCATGGGTCATTGACGGGAGGCTCCACCTCGAGGCGCGAGTGGTACAACTACCTTCAGTCCGGTGGTATG
TCGTCATCGTCGTCGGAGTCGGTCTTGGAGCCCAACCGACGGTTGTCGCCGGTGGATGGGAACAAGTCGATGTTGCTCGA
CGACTCATTGCTCGCCACCATGGAACAGCTTGACCGTGGAGTTCCCCGTCACGTTGGTTTGCGCGGGCAACCAACACAAG
GAGCAGAACATGTCCAACAACTCATTCCTCGGTTCCTCGCCTTGACAATTAACATAGGGAAGGGAAGGAATCAACTATCA
GTAAGAGGGTTAGCAGAAGACTCCATAGCTCTAGCTCAAGTGACGGACATTGTTGAGATAACTGCATCTCCTCCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.870.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis