Browse Element(s) Details


OsAffx.23732.1.S1_at

Description tigr:9629.m04817
TID=OsAffx.23732.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4984011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49800OsAffx.11536.1.S1_at11/111+28923828..28924902hypothetical protein
LOC_Os01g49810OsAffx.23731.1.S1_at11/111+28926142..28927092hypothetical protein
LOC_Os01g49820Os.41653.1.S1_x_at11/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.41653.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.20321.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49830Os.8019.1.S1_at11/111+28946388..28947953DNA-binding protein RAV1, putative, expressed
LOC_Os01g49840OsAffx.23732.1.S1_at11/111+28949350..28949637hypothetical protein
LOC_Os01g49849NANA1+28952420..28952696NA
LOC_Os01g49860OsAffx.11537.1.S1_at11/111+28956419..28957326hypothetical protein
LOC_Os01g49870OsAffx.21485.1.S1_at10/111+28972043..28975273transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23732.1.S1_at--473--4811Chr01:28949583..28949607 (25 bp)
GCTCTGACCAAGTGCGTGAACCAAG
LOC_Os01g49840
OsAffx.23732.1.S1_at--245--9131Chr01:28949571..28949595 (25 bp)
TGCGTGAACCAAGAACTGCATCATG
LOC_Os01g49840
OsAffx.23732.1.S1_at--1112--7351Chr01:28949568..28949592 (25 bp)
GTGAACCAAGAACTGCATCATGATG
LOC_Os01g49840
OsAffx.23732.1.S1_at--577--4971Chr01:28949554..28949578 (25 bp)
GCATCATGATGAACATTTTAGTTTT
LOC_Os01g49840
OsAffx.23732.1.S1_at--738--5531Chr01:28949518..28949542 (25 bp)
GAAAAATAAAATCTCCAGTGCTGGC
LOC_Os01g49840
OsAffx.23732.1.S1_at--1030--2431Chr01:28949511..28949535 (25 bp)
AAAATCTCCAGTGCTGGCAACGCAC
LOC_Os01g49840
OsAffx.23732.1.S1_at--200--4351Chr01:28949504..28949528 (25 bp)
CCAGTGCTGGCAACGCACGTTTATA
LOC_Os01g49840
OsAffx.23732.1.S1_at--1106--7291Chr01:28949501..28949525 (25 bp)
GTGCTGGCAACGCACGTTTATATTA
LOC_Os01g49840
OsAffx.23732.1.S1_at--112--8211Chr01:28949496..28949520 (25 bp)
GGCAACGCACGTTTATATTACCATT
LOC_Os01g49840
OsAffx.23732.1.S1_at--530--4111Chr01:28949491..28949515 (25 bp)
CGCACGTTTATATTACCATTATGGA
LOC_Os01g49840
OsAffx.23732.1.S1_at--1083--331Chr01:28949467..28949491 (25 bp)
ATACAATTTTGAGATGATATCATCA
LOC_Os01g49840
Target Sequence 
GCTCTGACCAAGTGCGTGAACCAAGAACTGCATCATGATGAACATTTTAGTTTTATTTACAAGTGGAAAAATAAAATCTC
CAGTGCTGGCAACGCACGTTTATATTACCATTATGGATACAATTTTGAGATGATATCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23732.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis