Browse Element(s) Details


OsAffx.23731.1.S1_at

Description tigr:9629.m04814
TID=OsAffx.23731.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4981011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49740Os.28814.1.S1_at11/111+28899980..28902522expressed protein
LOC_Os01g49740Os.28814.2.S1_x_at11/111+28899980..28902522expressed protein
LOC_Os01g49750Os.29043.1.S1_at11/111+28902662..28903521expressed protein
LOC_Os01g49760Os.33553.2.S1_x_at11/111+28904947..28910543expressed protein
LOC_Os01g49760Os.33553.1.S1_at11/111+28904947..28910543expressed protein
LOC_Os01g49770Os.7556.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.45918.1.S1_x_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49770Os.7556.1.S1_at11/111+28909690..28913374Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g49780NANA1+28916796..28917296hypothetical protein
LOC_Os01g49790NANA1+28921794..28922069hypothetical protein
LOC_Os01g49800OsAffx.11536.1.S1_at11/111+28923828..28924902hypothetical protein
LOC_Os01g49810OsAffx.23731.1.S1_at11/111+28926142..28927092hypothetical protein
LOC_Os01g49820Os.41653.1.S1_x_at11/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.41653.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49820Os.20321.1.S1_at10/111+28931910..28935061Lipid phosphate phosphatase 2, putative, expressed
LOC_Os01g49830Os.8019.1.S1_at11/111+28946388..28947953DNA-binding protein RAV1, putative, expressed
LOC_Os01g49840OsAffx.23732.1.S1_at11/111+28949350..28949637hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23731.1.S1_at--540--8031Chr01:28926595..28926619 (25 bp)
GGAGTGCTAGTCATGGCGACATCAT
LOC_Os01g49810
OsAffx.23731.1.S1_at--655--91Chr01:28926618..28926642 (25 bp)
ATTCCCATGGGTGACATCGGCTGAT
LOC_Os01g49810
OsAffx.23731.1.S1_at--475--491Chr01:28926633..28926657 (25 bp)
ATCGGCTGATCTGCCAGTGTTGCAT
LOC_Os01g49810
OsAffx.23731.1.S1_at--645--7411Chr01:28926649..28926673 (25 bp)
GTGTTGCATTGCACCCTAGAGAGCA
LOC_Os01g49810
OsAffx.23731.1.S1_at--936--1071Chr01:28926701..28926725 (25 bp)
AGGGCAAAGCCACCTGCAATCGTTG
LOC_Os01g49810
OsAffx.23731.1.S1_at--338--3191Chr01:28926717..28926741 (25 bp)
CAATCGTTGCAGTGCGGAGGTGCCC
LOC_Os01g49810
OsAffx.23731.1.S1_at--76--1051Chr01:28926773..28926797 (25 bp)
AGGTGCGCGACTATGTTGCAGCCAA
LOC_Os01g49810
OsAffx.23731.1.S1_at--378--10731Chr01:28926788..28926812 (25 bp)
TTGCAGCCAACATCCACATCATGGA
LOC_Os01g49810
OsAffx.23731.1.S1_at--489--2091Chr01:28926803..28926827 (25 bp)
ACATCATGGATGACCGTGCCCCGGA
LOC_Os01g49810
OsAffx.23731.1.S1_at--310--6351Chr01:28926945..28926969 (25 bp)
GATGCTGGGCTGTTGCACACTAGAA
LOC_Os01g49810
OsAffx.23731.1.S1_at--1046--4371Chr01:28927015..28927039 (25 bp)
GCCAAGACCCGCGTGTTGTACTATG
LOC_Os01g49810
Target Sequence 
GGAGTGCTAGTCATGGCGACATCATTCCCATGGGTGACATCGGCTGATCTGCCAGTGTTGCATTGCACCCTAGAGAGCAT
GTTGCTGAAGGGCATCACGTCTGTGGAGGGCAAAGCCACCTGCAATCGTTGCAGTGCGGAGGTGCCCATCGCGTACGATC
TGGACGCAAAGTTCCGGGAGGTGCGCGACTATGTTGCAGCCAACATCCACATCATGGATGACCGTGCCCCGGAGCACTGG
ATGTGCCCGCGGCTGCCAGACTGCGGCTCGTGCGGCAAGAAGGCCTGCATGTGGCCACAGATCCCAAACGAGAAGCGTGA
GATCAACTGGTTGTTCCTCTTCCTTGGCCAGATGCTGGGCTGTTGCACACTAGAAGGCCTCAAGTTCTTCTGCAAGAATA
CCAAGAATCACTGCACTGGCGCCAAGACCCGCGTGTTGTACTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23731.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis