Browse Element(s) Details


OsAffx.32149.3.S1_at

Description tigr:9640.m04125
TID=OsAffx.32149.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4200011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41956Os.12400.1.S1_x_at9/1112+25983062..25987159Galactosyltransferase family, putative, expressed
LOC_Os12g41962Os.35155.1.S1_at11/1112+25988161..25992511expressed protein
LOC_Os12g41970OsAffx.32147.1.S1_at11/1112+25992801..25993931Lipase family protein
LOC_Os12g41980OsAffx.32148.1.S1_at11/1112+26000435..26001631Lipase family protein
LOC_Os12g41990OsAffx.21485.1.S1_at5/1112+26005139..26006857transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g42000OsAffx.32149.3.S1_at11/1112+26010614..26011272hypothetical protein
LOC_Os12g42000Os.29072.1.S1_at2/1112+26010614..26011272hypothetical protein
LOC_Os12g42010OsAffx.7860.1.S1_at11/1112+26012052..26013206Lipase family protein
LOC_Os12g42020Os.54625.1.S1_at11/1112+26021615..26023374Serine/threonine protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32149.3.S1_at--234--9571Chr12:26010717..26011055 (25 bp)
TCTTCACACCATGGCTATGCATGCA
LOC_Os12g42000
OsAffx.32149.3.S1_at--503--10133Chr12:26011046..26011070 (25 bp)
TATGCATGCATGTATGCCTCCTTGT
LOC_Os12g42000
OsAffx.32149.3.S1_at--189--9252Chr12:26011064..26011088 (25 bp)
TCCTTGTCACCGTGCTGAGGCTGGT
LOC_Os12g42000
OsAffx.32149.3.S1_at--1012--4231Chr12:26011097..26011121 (25 bp)
CCGGGAACTGTCAGGCCGCAAGCTC
LOC_Os12g42000
OsAffx.32149.3.S1_at--370--5171Chr12:26011114..26011138 (25 bp)
GCAAGCTCCTTCCTGAGTAGATGCG
LOC_Os12g42000
OsAffx.32149.3.S1_at--740--3631Chr12:26011122..26011146 (25 bp)
CTTCCTGAGTAGATGCGTCCTGGTG
LOC_Os12g42000
OsAffx.32149.3.S1_at--168--6952Chr12:26011130..26011154 (25 bp)
GTAGATGCGTCCTGGTGTTGCCGTC
LOC_Os12g42000
OsAffx.32149.3.S1_at--736--8793Chr12:26011145..26011169 (25 bp)
TGTTGCCGTCGCTCGGGCTTCAATA
LOC_Os12g42000
OsAffx.32149.3.S1_at--658--4891Chr12:26011161..26011185 (25 bp)
GCTTCAATACAAGGACTTGGACGGT
LOC_Os12g42000
OsAffx.32149.3.S1_at--884--9391Chr12:26011205..26011229 (25 bp)
TCGTCTTCTGCTTGATGATGCTGGT
LOC_Os12g42000
OsAffx.32149.3.S1_at--948--6292Chr12:26011218..26011242 (25 bp)
GATGATGCTGGTGAGCGACGACAAA
LOC_Os12g42000
Target Sequence 
TCTTCACACCATGGCTATGCATGCATGTATGCCTCCTTGTCACCGTGCTGAGGCTGGTCATCCCGGCCGGGAACTGTCAG
GCCGCAAGCTCCTTCCTGAGTAGATGCGTCCTGGTGTTGCCGTCGCTCGGGCTTCAATACAAGGACTTGGACGGTGGTGC
CGTACGCGACGGCCTCGTCTTCTGCTTGATGATGCTGGTGAGCGACGACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32149.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis