Browse Element(s) Details


Os.9525.3.S1_at

Description gb:AK108397.1
DB_XREF= gi:32993606
TID=Os.9525.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9525 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-F11, full insert sequence.
FL= gb:AK108397.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2972011/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29690OsAffx.5954.5.S1_x_at5/118+18095767..18101049retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g29690OsAffx.5954.4.S1_x_at3/118+18095767..18101049retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g29700OsAffx.5954.3.S1_x_at3/118+18106864..18109009Zinc knuckle family protein
LOC_Os08g29700OsAffx.5954.1.S1_x_at1/118+18106864..18109009Zinc knuckle family protein
LOC_Os08g29710Os.21565.1.S1_at11/118+18110740..18116601beta 1,3-glycosyltransferase-like protein I, putative, expressed
LOC_Os08g29720Os.9525.1.S1_a_at11/118+18119155..18124666Mitochondrial carrier protein, expressed
LOC_Os08g29720Os.9525.3.S1_at11/118+18119155..18124666Mitochondrial carrier protein, expressed
LOC_Os08g29730Os.8737.1.S1_at11/118+18132809..18136710expressed protein
LOC_Os08g29740OsAffx.5980.1.S1_at9/118+18138427..18140983hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005215molecular_functiontransporter activity
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9525.3.S1_at--886--4531Chr08:18119772..18119796 (25 bp)
GCCCGGACGCGGTAACGAATCTGAT
LOC_Os08g29720
Os.9525.3.S1_at--1092--471Chr08:18119790..18119814 (25 bp)
ATCTGATGATCTCGATGCGGGTGCC
LOC_Os08g29720
Os.9525.3.S1_at--102--9191Chr08:18119811..18119835 (25 bp)
TGCCGTGTGGGTGGTTTGCAATTTA
LOC_Os08g29720
Os.9525.3.S1_at--909--5191Chr08:18119828..18119852 (25 bp)
GCAATTTAGTTGTAGTTAGCCTCCG
LOC_Os08g29720
Os.9525.3.S1_at--1040--10451Chr08:18119843..18119867 (25 bp)
TTAGCCTCCGATTTCATGTGGTGTG
LOC_Os08g29720
Os.9525.3.S1_at--457--6571Chr08:18119871..18119895 (25 bp)
GATTCTTGCTTTTTGGGTTTTCGTG
LOC_Os08g29720
Os.9525.3.S1_at--970--3511Chr08:18119910..18119934 (25 bp)
CATGATGTTTGTTGTGTGCTTCTAC
LOC_Os08g29720
Os.9525.3.S1_at--447--7311Chr08:18119925..18119949 (25 bp)
GTGCTTCTACAGTTGACCAGGGTGA
LOC_Os08g29720
Os.9525.3.S1_at--568--7431Chr08:18119970..18119994 (25 bp)
GTGTTTCTGTTTGTTTTGCCATCTA
LOC_Os08g29720
Os.9525.3.S1_at--670--7591Chr08:18120045..18120069 (25 bp)
GGGCATGCTAATCTGCTTGTTGACC
LOC_Os08g29720
Os.9525.3.S1_at--392--4931Chr08:18120059..18120083 (25 bp)
GCTTGTTGACCCAGAATACCCAGAA
LOC_Os08g29720
Target Sequence 
GCCCGGACGCGGTAACGAATCTGATGATCTCGATGCGGGTGCCGTGTGGGTGGTTTGCAATTTAGTTGTAGTTAGCCTCC
GATTTCATGTGGTGTGGGGGATTCTTGCTTTTTGGGTTTTCGTGATTTCAGGCTAGTACATGATGTTTGTTGTGTGCTTC
TACAGTTGACCAGGGTGATACTGTGTGGAATGCAGTTAGTGTTTCTGTTTGTTTTGCCATCTAATTATTAATATTACCCA
AGCTGAATGTTGAGGTTCATTAGTTGAATGCAGGGGCATGCTAATCTGCTTGTTGACCCAGAATACCCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9525.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis