Browse Element(s) Details


OsAffx.23604.1.S1_at

Description tigr:9629.m03854
TID=OsAffx.23604.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4038011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40340Os.7323.1.S1_at11/111+23103794..23109607SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os01g40340Os.45995.1.S1_x_at11/111+23103794..23109607SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os01g40350OsAffx.11403.1.S1_at9/111+23109762..23110364hypothetical protein
LOC_Os01g40360OsAffx.11404.1.S1_s_at11/111+23112474..23114814amino acid transporter family protein, putative
LOC_Os01g40360Os.21565.1.S1_at1/111+23112474..23114814amino acid transporter family protein, putative
LOC_Os01g40370OsAffx.23603.2.S1_at6/111+23117960..23120571SIT4 phosphatase-associated family protein, putative
LOC_Os01g40380OsAffx.23604.1.S1_at11/111+23124473..23125814hypothetical protein
LOC_Os01g40380OsAffx.11404.1.S1_s_at1/111+23124473..23125814hypothetical protein
LOC_Os01g40390OsAffx.23603.1.S1_at11/111+23130534..23135052hypothetical protein
LOC_Os01g40390OsAffx.27081.1.S1_x_at1/111+23130534..23135052hypothetical protein
LOC_Os01g40400OsAffx.11406.1.S1_at11/111+23135546..23137534Histone deacetylase family protein
LOC_Os01g40410OsAffx.27081.1.S1_x_at11/111+23141921..23144757Transmembrane amino acid transporter protein
LOC_Os01g40410OsAffx.27081.1.S1_at11/111+23141921..23144757Transmembrane amino acid transporter protein
LOC_Os01g40420Os.9530.2.S1_x_at11/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420Os.9530.2.S1_at11/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420Os.9530.1.S1_at10/111+23147083..23150030CBS domain containing protein, expressed
LOC_Os01g40420OsAffx.27080.1.S1_x_at4/111+23147083..23150030CBS domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0016020cellular_componentmembrane
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23604.1.S1_at--1029--1771Chr01:23124508..23124532 (25 bp)
ACCCCAGCGGAATAAATTGGTGACT
LOC_Os01g40380
OsAffx.23604.1.S1_at--761--3171Chr01:23124522..23124543 (22 bp)
AATTGGTGACTAGCGTGGAGGTTTT
LOC_Os01g40380
OsAffx.23604.1.S1_at--869--3711Chr01:23125310..23125334 (25 bp)
CTACGCAGTGACAACAATGTTGGGT
LOC_Os01g40380
OsAffx.23604.1.S1_at--699--2231Chr01:23125323..23125347 (25 bp)
ACAATGTTGGGTTATCTGATCTATG
LOC_Os01g40380
OsAffx.23604.1.S1_at--640--9991Chr01:23125438..23125627 (25 bp)
TAGCGAACTACCTCATGCCGTTCAA
LOC_Os01g40380
OsAffx.23604.1.S1_at--134--5471Chr01:23125610..23125631 (22 bp)
GAACTACCTCATGCCGTTCAACGTA
LOC_Os01g40380
OsAffx.23604.1.S1_at--483--451Chr01:23125686..23125710 (25 bp)
ATCTACATGCCTCGATTTGGAGTTG
LOC_Os01g40380
OsAffx.23604.1.S1_at--316--3931Chr01:23125726..23125750 (25 bp)
CGGCGATCGTCGGAATACTAGTCAT
LOC_Os01g40380
OsAffx.23604.1.S1_at--1062--491Chr01:23125731..23125755 (25 bp)
ATCGTCGGAATACTAGTCATCGGAG
LOC_Os01g40380
OsAffx.23604.1.S1_at--495--10051Chr01:23125744..23125768 (25 bp)
TAGTCATCGGAGTATGCATCGCCTT
LOC_Os01g40380
OsAffx.23604.1.S1_at--926--3531Chr01:23125748..23125772 (25 bp)
CATCGGAGTATGCATCGCCTTCGTT
LOC_Os01g40380
Target Sequence 
ACCCCAGCGGAATAAATTGGTGACTAGCGTGGAGGTTTTGGTGATCTCTTCAGTGCTGTGCAGTCTCAACTACGCAGTGA
CAACAATGTTGGGTTATCTGATCTATGGTGAAGTTGTGCAGGCGCCGGTGACACTGAACTTACCCACGGGGAAGCTGTAC
ACCAGGATCGCCATCCTGACGACGCTGATCACCCCGCTAGCGAACTACCTCATGCCGTTCAACGTATCTTCGCTGAACTT
CACCATTGTCGTGTTGTTCCCATGCCTGAGCTACCTCAAGATCTACATGCCTCGATTTGGAGTTGGCCGCTTCGAGGTGG
CGGCGATCGTCGGAATACTAGTCATCGGAGTATGCATCGCCTTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23604.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis